Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01088 ATGTCTTCTTTCAATCTCTCTTATTCTTCCTCACCAGCCCTCTCATGTCCCCGTTCTTATATTCAATGCAGGGCAAGCAAGCATTTCAAATTGTTCAATGACGTGCCTTTTGTCCGAATGAATTCTAAATTTCCCTCAAGCGATAGTAGAATTAAAGCTACGTTGATCTCTGGAGGAGGAGACCTACTTTCCTATTCAAGTAGCAATGACATTGTGATAGGTAAAAATGTGGTTGGAGATGAGTCTGTTCGAATTGATGTACAATCTAATGGAACACCAGCAGCAGACACAGGGATAACAAGCAATGTTTTCTCGGTTGATGGTGATGAATTTGATCTGGACAGTCCAACAGCAGGTTTTGCTTCTATCCCTGAGGCCATTGAAGACATTCGCCAGGGAAAGATGGTAGTGGTCGTGGACGACGAAGATCGGGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCCGAGGCAATGGCTTTTATTGTAAAGCATGGAACTGGGATAGTTTGTGTAAGCATGAAAGAGGAAGATTTGGATAGATTGGAACTTCCTTTGATGGTAAACAGTAAGGACAATGATGAGAAGCTTTGTACGGCATTCACTGTGACAGTGGATGCTAAACATGGTACCACCACTGGTGTGTCAGCTCAGGATAGGGCAACAACAGTCTTAGCCCTTGCATCTAGAGATTCTACTCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACCGGGAAGGTGGTGTCTTGAAGAGAGCTGGACATACTGAAGCTTCAGTTGATCTTGCTGTACTTGCTGGCATGGATCCAGTGGCAGTTCTGTGTGAGATAGTAGATGACGATGGTTCCATGGCTAGACTGCCAAAACTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTATATCTATTGCTGACTTAATAAGATATAGAAGAAAAAGAGACAAGTTAGTGGACCGGGCTTCTGCTGCACGGATACCTACAATGTGGGGACCATTCACGGCTTACTGTTACAGGTCCCTTTTAGACGGAATTGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGACAAGATGTCCTTGTGAGAGTACACTCTGAGTGTCTAACCGGAGACATATTTGGATCTGCCAGATGTGACTGCGGAAATCAGCTTGCACTCTCAATGCAACAGATTGAGGCCGCTGGTAGGGGTGTGCTGGTATATCTGCGTGGACACGAAGGACGTGGTATTGGATTGGGCCACAAGCTTCGTGCTTATAACCTACAGGACGATGGACGTGATACAGTAGAAGCCAATGAGGAGTTGGGATTGCCCGTTGACTCCAGGGAGTACGGCATTGGCGCTCAGATGTTAAGGGACTTGGGTGTTAGATCGATGAAGCTGATGACCAACAATCCAGCAAAATATGTTGGGCTCAAAGGCTATGGTTTGACAGTTTCGGGTAGGATCCCAATATTAACACTCGTTACTTCAGAGAACAAGAGATATTTAGAGACCAAGCGTGTGAAAATGGGTCACATATATGGCATGGAATTTAAAGGCCAACTGAGCACACATGACAGCGGTAATGGTAATGCCAGTAAGGTTGATGACTCTAGTACTGTTACACAGCAGATGAGGGAGTAG 1653 0.4495 MSSFNLSYSSSPALSCPRSYIQCRASKHFKLFNDVPFVRMNSKFPSSDSRIKATLISGGGDLLSYSSSNDIVIGKNVVGDESVRIDVQSNGTPAADTGITSNVFSVDGDEFDLDSPTAGFASIPEAIEDIRQGKMVVVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVNSKDNDEKLCTAFTVTVDAKHGTTTGVSAQDRATTVLALASRDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGMDPVAVLCEIVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVDRASAARIPTMWGPFTAYCYRSLLDGIEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALSMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMKLMTNNPAKYVGLKGYGLTVSGRIPILTLVTSENKRYLETKRVKMGHIYGMEFKGQLSTHDSGNGNASKVDDSSTVTQQMRE* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01088 550 SUPERFAMILY RibA-like 323 494 IPR036144 -
Lapu6g01088 550 Gene3D GTP cyclohydrolase II 325 496 IPR036144 -
Lapu6g01088 550 MobiDBLite consensus disorder prediction 527 550 - -
Lapu6g01088 550 SUPERFAMILY YrdC/RibB 119 321 IPR017945 -
Lapu6g01088 550 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 121 318 IPR000422 GO:0008686|GO:0009231
Lapu6g01088 550 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 118 322 IPR000422 GO:0008686|GO:0009231
Lapu6g01088 550 PANTHER GTP CYCLOHYDROLASE II-RELATED 119 518 - -
Lapu6g01088 550 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 125 317 IPR000422 GO:0008686|GO:0009231
Lapu6g01088 550 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 111 324 - -
Lapu6g01088 550 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 119 515 IPR016299 GO:0009231
Lapu6g01088 550 NCBIfam GTP cyclohydrolase II 328 516 IPR000926 GO:0003935|GO:0009231
Lapu6g01088 550 CDD GTP_cyclohydro2 324 516 IPR000926 GO:0003935|GO:0009231
Lapu6g01088 550 FunFam Riboflavin biosynthesis protein RibBA 325 496 - -
Lapu6g01088 550 Hamap GTP cyclohydrolase-2 [ribA]. 323 519 IPR000926 GO:0003935|GO:0009231
Lapu6g01088 550 Gene3D DHBP synthase 111 324 - -
Lapu6g01088 550 Pfam GTP cyclohydrolase II 329 493 IPR032677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01088 Lapu-Chr6 10853643 10859385 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01088 K14652 - gmx:100801046 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02868 3 51618975 51624330 Lapu6g01088 6 10853643 10859385 PCT