Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00854 ATGGCCATTACTACTCACACTCTATCCGCCACAGAAAAAAAACATTGGTGGATTACCAATCGAAAGATTGTTGAGAAATACATAAAAGACGCTCGCACTCTTATAGCCACGCAAGATCAGAGGGAGATTGCTTCGGCTCTTAACCTTCTAGATGCGGCTCTGGCGATTTCTCCGAGGCTGGACCAAGCGCTTGAGCTTAGAGCCAGGGCTCTGCTCTATTTGCGGCGCTTCAAGGAGGTCGCGGATATGCTTCAGGACTACATTCCCAGCCTCAGAATCAACGATGACTCTTCCTCTGTTTCCTCCGACACCTCTTCTCAACAGCATTCACGAGAGGGAGTGAAGCTTCTCCCTTCCTCCGAGTCGCCCATGCGAGATCAGAGCTTCAAGTGCTTCTCTGTTTCCGACCTGAAGAAGAAAGTTATGGCAGGGCTGTGTAAAACCTGCGAGAAGGAAGGGCAGTGGAGATACTTGGTATTGGGTGAAGCGTGCTGCCACCTGGGCCTAATGGAGGATGCAATGGTTCTTCTTCAAACGGGAAAACGTCTTGCAAGCGCCACACTCCGGCGCGAGAGTGTGTGCTGGTCACAAGACAGCTTCAATGTTACGAACATCCAATTCTCCGGCGATGCCACAAATGCGCCACCCACAACACCACCGCGAACTCTTCTTGCGGCGGATTCCGAGAGTGTAACCCAACTCCTCGGCCACATAAAGTTCCTCCTCCGGCGACGCGCCGCCGCACTGGCCGCCCTCGATGCTGGGCTCTACTCAGAGGCGATTCGCCACTTTTCGAAAATTGTGGACGGCCGGCGCAGCGCGCCGCAGAGCTTCCTTGTCGAATGCTACATCCTCCGCGCCTCCGCGCACCGTTCCGCCGGGAGAATCGCAGAGTCAATTGCAGATTGTAACCGCACCCTTGCTTTGGACCCCACTTGCATTCAAGCACTCGAAACCAGAGCTTCACTCTTCGAAAACATTCGTTGTTTACCCGATTCTCTTCACGACCTCGAACACTTGAAGCTCCTCTACAATTCAATTTTACGAGACCGCAAGCTTCCCGGTCCTGCGTGGAAGCGCCACAACGTGCGTTATAGGGAAATTCCAGGAAAACTCTGCACCCTCACCATTAAAATTCAAGAACTGAAACAGAAGCTAGCTTCTGGAGAAACAGGAAACGTTGATTACTATGCTTTGATTGGTGTACGACGAGGTTGTTCCCGGTCGGAGTTAGAGAGGGCTCACTTGTTGCTTTCCTTGCGGCACAAGCCTGATAAGGCAACGGGGTTCATTGAAAGGTGTGAGCTTGCGGATGAGCGTGATATTGAGTCGGTTAAAGAGAGGGCGAAGATGTCATCTTTGTTGTTGTATAGATTGGTTCAGAAGGGTTACACTAATGTTATGAGTAACATCATGGATGAGGAAGCTGCTGAGAAGCAGAGAAAGAAGGCTGCTTTGCAGGCTATTCAAGTGCAGAAAGAGAAAGCAGATGAAACTGAGTGTTTGAGCAAGGTTGAGTGTACTAGGAGCAATGTGGAGAATAATAACGATAACAATAATGATATTGTTCAAATGTCTCAAAATAAGTCGATGGTGTGTTCTTCAACTGTGAATCCGGCGATGTTTCAGGGCGTTTTCTGCCGTGACATTGCTGTGGTGGGGAACTTGCTTTCTCAGGTGGGGTTTAATCGGTCCATGCCGGTGAAGTATGAAGCGTTGAGCTGTTGA 1728 0.5023 MAITTHTLSATEKKHWWITNRKIVEKYIKDARTLIATQDQREIASALNLLDAALAISPRLDQALELRARALLYLRRFKEVADMLQDYIPSLRINDDSSSVSSDTSSQQHSREGVKLLPSSESPMRDQSFKCFSVSDLKKKVMAGLCKTCEKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASATLRRESVCWSQDSFNVTNIQFSGDATNAPPTTPPRTLLAADSESVTQLLGHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRSAPQSFLVECYILRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFENIRCLPDSLHDLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCTLTIKIQELKQKLASGETGNVDYYALIGVRRGCSRSELERAHLLLSLRHKPDKATGFIERCELADERDIESVKERAKMSSLLLYRLVQKGYTNVMSNIMDEEAAEKQRKKAALQAIQVQKEKADETECLSKVECTRSNVENNNDNNNDIVQMSQNKSMVCSSTVNPAMFQGVFCRDIAVVGNLLSQVGFNRSMPVKYEALSC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00854 575 SMART tpr_5 280 313 IPR019734 GO:0005515
Lapu6g00854 575 Coils Coil 472 499 - -
Lapu6g00854 575 Gene3D DnaJ domain 380 525 IPR036869 -
Lapu6g00854 575 Gene3D Tetratricopeptide repeat domain 31 347 IPR011990 GO:0005515
Lapu6g00854 575 MobiDBLite consensus disorder prediction 95 125 - -
Lapu6g00854 575 SUPERFAMILY Chaperone J-domain 391 429 IPR036869 -
Lapu6g00854 575 SUPERFAMILY TPR-like 246 341 IPR011990 GO:0005515
Lapu6g00854 575 PANTHER OS01G0273500 PROTEIN 9 575 - -
Lapu6g00854 575 CDD DnaJ 395 429 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00854 Lapu-Chr6 8745023 8748697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00854 - - vra:106757864 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00854 6 8745023 8748697 Lapu6g00854 6 8745023 8748697 ECH
Lapu6g00854 6 8745023 8748697 Lapu7g00566 7 6413204 6416598 PCT