Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00791 ATGGCTACGCTTTCTGCAAGCGCTTCTCCTCCATGGCCAAACCCTAATCCCACCACCTCCCCCAATTCAAATCCAAAGCCTAGTATCCTCCCCGACAACGCCGAAGCCCTCGACCTCGAAGCCATCATGCTTCCGCGACCAAAATTGCTACCGCCACACCGCTCCCCCGCCGTATCCCCTCCAGTATCCTCCCCGGAGACGCCCTCGTCGGTGCTCCACCTCTCCTTCAACCAGGACCATGCTTGCTTCTCAGCCGCCACCAGCAACGGCTTTCGCATCTACAATTGCAACCCCTTCAGCGAACAATTCCGCCGCGATTTCGACGGCGGCGGAATCGGCCACGTCGAGATGCTTTTCCGCTGCAACATCATCGCCCTAGTCGGCGGCGGACCCAATCCTCAGTACTCGCCCAACAAGGTCGTGATCTGGGACGACCATGAAGGCTGCTCCATCGGTGACCTATCTCCCCGTGCCGCCGTCCGCGGCGTACGGCTCCGCCGCGATCGGGTAATCGTCGTCGTCGAGCAGAAGGTTTTGGTCTACAACTTTCAGGACCTTAGTCTCTTGCACCAGATTGAGACCTTTCCCAACCCCAAGGGCCTCTGCGCGGTTTCGCAAGTGTCGAGGTCGTTCGTTCTCGCGTGCCCTGGGTTGCAGAAGGGTCAGATTCGCGTGGAGCACTACTCGCAGAAGAAGACAAAGTTCATATCTGCTCATGATTCCAGAATTGCATGTTTCGCTCTGACGCTTAATGGGCAGTTAATTGCCACTGCCAGCACCAAGGGCACGCTGATTAGAATTTTCGACACGGTTCAGGGCACGCTTCTTCAGGAAGTCAGAAGGGGTGCAAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGTTAGCTGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCAACCCCGAGCAAGAAAAGCCTCAAAATTCATCCAATTCAGATGCTGCCATTACCCCATCTAACTCATCTCGCTCCTTCACTAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCGCTTACAAGAGGGCTCTTATTACACAGTTGCATTTGGTCAGCAAAAGAATACAGTCGTAATTCTTGGCATGGATGGAAGCTTCTATAGATGTGAATTTGATCCAGTACACGGAGGGGAGATGACTCAGCTGGAGTATCATAACTTTTTAAAGCCGCAACCAATGGAAGAAATTTTGTAG 1275 0.5216 MATLSASASPPWPNPNPTTSPNSNPKPSILPDNAEALDLEAIMLPRPKLLPPHRSPAVSPPVSSPETPSSVLHLSFNQDHACFSAATSNGFRIYNCNPFSEQFRRDFDGGGIGHVEMLFRCNIIALVGGGPNPQYSPNKVVIWDDHEGCSIGDLSPRAAVRGVRLRRDRVIVVVEQKVLVYNFQDLSLLHQIETFPNPKGLCAVSQVSRSFVLACPGLQKGQIRVEHYSQKKTKFISAHDSRIACFALTLNGQLIATASTKGTLIRIFDTVQGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSNPEQEKPQNSSNSDAAITPSNSSRSFTKFKGVLPKYFNSEWSVAQFRLQEGSYYTVAFGQQKNTVVILGMDGSFYRCEFDPVHGGEMTQLEYHNFLKPQPMEEIL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00791 424 Pfam WD domain, G-beta repeat 282 312 IPR001680 GO:0005515
Lapu6g00791 424 SMART WD40_4 58 95 IPR001680 GO:0005515
Lapu6g00791 424 SMART WD40_4 229 269 IPR001680 GO:0005515
Lapu6g00791 424 SMART WD40_4 272 313 IPR001680 GO:0005515
Lapu6g00791 424 MobiDBLite consensus disorder prediction 49 63 - -
Lapu6g00791 424 MobiDBLite consensus disorder prediction 48 70 - -
Lapu6g00791 424 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 67 414 - -
Lapu6g00791 424 MobiDBLite consensus disorder prediction 1 32 - -
Lapu6g00791 424 FunFam Autophagy-related protein 18a isoform A 68 400 - -
Lapu6g00791 424 Gene3D - 57 394 IPR015943 GO:0005515
Lapu6g00791 424 MobiDBLite consensus disorder prediction 10 24 - -
Lapu6g00791 424 MobiDBLite consensus disorder prediction 317 341 - -
Lapu6g00791 424 SUPERFAMILY WD40 repeat-like 65 392 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00791 Lapu-Chr6 8236019 8239666 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00791 K22991 - gmx:100781692 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00791 6 8236019 8239666 Lapu6g00791 6 8236019 8239666 ECH
Lapu6g00791 6 8236019 8239666 Lapu7g00381 7 4575582 4579180 ECH