Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00743 GTGCAGATATTATCAACCATGGACATGCCCACCATTGATGTGGACCTTGGACCTGGGAAGATAGAAGATGAGAAACAAGGAGGCCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTGGTTCACAAGTTGGCTCAGATGTTCCTTCCAGGTTTAGCCAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTCAAGACTCCTGGTTCTGTAGCAGTTGATTTAAGGAAGGAGATGATAGAGTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTAGAAGGTGGTCCAGACGGTGAAGTATCAGACCATCCTTATGATATCATTTCTAATTTGGTTGATGACTTTGCAAGTTCAAAGAGGAATCTGTTTAGTCGGGTTTCTGGATGGTTATTGAGTGAAAAGAGGGAAGACAACATAGAAGATTTCGTTCAAGAGATGGAAGTGAATGGGTTTTGGACACTTGAGAGGAGAGAAAAAGTTGCAGAAACTTTGTTAAAAAATGTTGACTTTGAGAACTCGTATCACTGCAACATGAGTTTTCATTCTGCGGAAGATCTTGCGAATCATGTTGACGATTGCAACTTTAGATCTATAATATGTGAAAATGAGGGATGCAATTCTAGATTTTGTGCATCTCATTTGGAAAACCATGATTCAACTTGTCCTTTCAAGATAATCTCATGTGAACAGAAGTGTCCTGCAAACATTATGAGGCGTGAGATGGATAGACATTGTATAACTGTCTGTCCAATGAAGCTTGTAAATTGTCCTTTTTACGCTATTGGTTGTCGGTCAGCGGTTGCACAATGTATGATTGAAAAACATCGTTCAGATGATATTAGTTCTCACTTGTGGCAGTTGCTTAAAGGGATCCACAAAGAAGCATCTGGGGATGATCTTAATCGTCGAGTGGAACAAATTATACAGATGTATAAGGAT 954 0.3962 VQILSTMDMPTIDVDLGPGKIEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKEMIEYLTQRSESFVAESVILEGGPDGEVSDHPYDIISNLVDDFASSKRNLFSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKVAETLLKNVDFENSYHCNMSFHSAEDLANHVDDCNFRSIICENEGCNSRFCASHLENHDSTCPFKIISCEQKCPANIMRREMDRHCITVCPMKLVNCPFYAIGCRSAVAQCMIEKHRSDDISSHLWQLLKGIHKEASGDDLNRRVEQIIQMYKD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00743 318 ProSiteProfiles Zinc finger TRAF-type profile. 217 269 IPR001293 GO:0008270
Lapu6g00743 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 287 IPR013083 -
Lapu6g00743 318 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Lapu6g00743 318 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 30 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00743 Lapu-Chr6 7804516 7805660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00743 - - pvu:PHAVU_001G200100g 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00743 6 7804516 7805660 Lapu6g00743 6 7804516 7805660 ECH
Lapu6g00743 6 7804516 7805660 Lapu7g00171 7 1809078 1814734 PCT