Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00134 ATGAAGTGTTTCTTCTTATCCTCCATCTCTCTTTTTATTTTCCTTTGTCTATGTTTTGAGAGTGTGTGGACTCAAAATGTATCCGAGAGTGACCGACAGGAAGCTAGCATTCCACCAAGAGGTTGGAACTCCTATGATTGCTTTTGCTGGACAATATCTGAAGAAGAATTCTTACATAGTGCTGAAATAGTTTCTCAGCGTCTCCGTGATCATGGATATGAGTATGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTCAAGGGTGCTTATCATGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGGAGGATGCTTCCTGATCCAGGAAGGTGGCCTTCTTCTGAAAATGGGAAAGGATTTGCCGAAGTAGCTAATCAAGTACATGGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTGTAAACGCGAACACCCCTATCCTCGATACAAAAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAGGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTGAATACAAAATTGGGAGCAGGGAAAGCGTTTCTGAGATCCCTTTATGAGCAGTATGCTTCATGGGATGTTGATTTTGTGAAACATGACTGTGTATTTGGGGATGACTTTGATTTAAATGAAATAAGCTACGTGTCTGAGGTTCTCAAGGATTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAATCACATTTTGATATTGCAAGGGATTTTTCAAATGCTAATATGATAGGAACAAAAGGTTTAATGGGGAAATCCTGGCCTGATTTGGACATGCTACCCTTTGGATGGCTAACTGATCCAGGTTCAAATAAAGGTCCACACAGGTTTAGTCACCTCAATCTGGAAGAAAAGAAGACACAGATGACTCTTTGGTCTATGGCAAAGTCTCCCCTTATGTATGGTGGGGATGTTCGGAAGATTGATCCTAGCACATATGATATTATAACAAATCCTACCCTTCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATTACAAGTGTGAAGAGTGAAGATCAGGATCTTAGTATGAGAAGAAGCGCCAAAGCAATAAAAACAACTTTCACCCATTCATTAAGCCTCACAAGGTGCACCGAGTCAAAAGCAAGGGGTTGGGCTAGTAAAAATCTTAACCAATATGTTGAAAGAATATGTTGGAAAAGGAGTCTAGGAAACGAGCATCTTGCCCCCTTCTGTGTACTCAAAAGACAACTTTACTTCCCATTAGATGAAGTGAGTATGTATCAAGAGTATCATCAAGGGAAACATCATTTAGTTGCAACCGACAGAATAAAATTTTGTTTGGATGCTTCTCCAAAACGCAAGCTCACTTCTAAAGAGTTCAAGAGAGGAACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAATTGAATCCTAATGGGACCCTGGTGAATAGTTATTCGGGCTTGTGTGCAACAGTAGAGTCTAGAGAAGATACTATTAATTCTGGTGGCTTGCGCTCTTGGATTGCTACAGGAAGAAAAGGAGAAGTCTATATTGCTTTCTTCAATCTAAGTGAACGGAAGACGGTAATATCTGCACAGGCATCTGACCTGGCTAAGTTACTTCCTGGTAGAGACTTTAGTTCTTGTGAGGGCAGTGAAGTGTGGAGTGGAGATTCTATAGAAATAACTGAAGGGACCTTATCAACAGCAGTGAAAATGCATGGAAGTGCCCTAATTGTTCTGAATTGCAACCACTCCCCCAAAGAAGGAAAAAAACTGCATTTCCCTGGCTAG 1956 0.4151 MKCFFLSSISLFIFLCLCFESVWTQNVSESDRQEASIPPRGWNSYDCFCWTISEEEFLHSAEIVSQRLRDHGYEYVVVDYLWYRRKVKGAYHDSLGFDVIDEWGRMLPDPGRWPSSENGKGFAEVANQVHGMGLKFGIHVMRGISTQAVNANTPILDTKTGGAYQESGRVWYAKDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYASWDVDFVKHDCVFGDDFDLNEISYVSEVLKDFDRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWGDVKSHFDIARDFSNANMIGTKGLMGKSWPDLDMLPFGWLTDPGSNKGPHRFSHLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDIITNPTLLEINSFSSNNMEFPYITSVKSEDQDLSMRRSAKAIKTTFTHSLSLTRCTESKARGWASKNLNQYVERICWKRSLGNEHLAPFCVLKRQLYFPLDEVSMYQEYHQGKHHLVATDRIKFCLDASPKRKLTSKEFKRGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVESREDTINSGGLRSWIATGRKGEVYIAFFNLSERKTVISAQASDLAKLLPGRDFSSCEGSEVWSGDSIEITEGTLSTAVKMHGSALIVLNCNHSPKEGKKLHFPG* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00134 651 SUPERFAMILY Ricin B-like lectins 495 554 IPR035992 -
Lapu6g00134 651 Pfam Alpha galactosidase C-terminal beta sandwich domain 556 635 IPR041233 -
Lapu6g00134 651 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 Gene3D - 550 638 IPR013780 -
Lapu6g00134 651 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Lapu6g00134 651 Pfam Alpha galactosidase A 208 383 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 CDD RICIN 522 546 IPR000772 -
Lapu6g00134 651 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 11 637 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 Gene3D Aldolase class I 16 385 IPR013785 -
Lapu6g00134 651 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Lapu6g00134 651 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00134 Lapu-Chr6 1028892 1034889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00134 13 467 Glycoside Hydrolase AT3G26380 66.377 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00134 - - gmx:100777954 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03273 3 55978396 55984363 Lapu6g00134 6 1028892 1034889 PCT