Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03273 ATGAAGTTGGATATTTGTAAGTATTTAACTGTGGTGGGAACATTGTTTGGTGGAACAGATGTGCTGGCAATGATGAAGTGCTTCTCTCTGTGCTTAGTCTCCTTTTGGGTTCTCCTTGCTCTCTGTTTGCTAAGTGTGTCATCTCAAAATATATCTGAGAGTAGCCTACAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCTTATGATTCCTTTTGCTGGACAATTTCTGAAGATGAATTCTTACAAAGTGCTGAAATAGTTTCCCAACGTCTCAAGGCTCATGGATATGAGTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAATCAAAGGTGCTTATCCCGATTCTCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTTCCAGACCCAGGAAGGTGGCCTTCTTCCACAGGTGGGAAGGGTTTCAGCGAAGTAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACTCAAGCTGTCAATGCGAACACCCCTATCCTAGATACAACAAAGGGAGGTGCATATCAAGAATCTGGTCGAGTGTGGCATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGCGTAAATACAAAGTTAGGAGCTGGGAGAGCCTTTTTGAAATCCCTGTACGAGCAGTATGCCGCATGGGGTGTTGATCTCGTGAAACATGACTGTGTGTTTGGCGATGACTTGGAATTAAATGAGATAAGCTATGTGTCAGAGGTTCTCAGTGCACTTAATCGTCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCCACGATGGCCAAGGATGTCAGTGGACTAGTGAACATGTATCGAATAACAGGAGATGACTGGGATAGTTGGGGGGATGTCAGGGCTCATTTTGACGTAACGAGAGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCAGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCACACAGGTTTAGTAGACTCACTCTAGAAGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCCAAGTCTCCCCTTATGTATGGAGGGGATGTGCGGAAGATTGATCCTACCACATACGAACTTATAACAAATCCTACCCTGCTAGAGATTAATTTCTTCAGCTCAAATAATATGGAGTTTCCTTATATCACAAGCTCCAATAACTTGAAGCACCTCGGAGGGAAAAAACAAAGACCGAAGCATGGAACAAAGGCATCATATACACATTCATTAGGTTTGTCTGGCTGTAGCGAACCAAAGGCCAGTGGTTGGTCTATTGAAAGTATTAACCAATATCTTGAAAGAATCTGCTGGAAAAAGAGTGTAGAAAACCAGCATCAAGCTCCATTCTGCGTAAACAAGAGAGAAATTCAACTCAGATTAGATGGTGAGAGTATGAATCAGGAGGAGTATCGAGGGAAACATCAACTAGTTGCTACTGACAGAATGAAATTTTGCTTAGACGCTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTTCAAGAGAGGAACATTTTCTCCGTGCAGATGGGATTCAAACCAGATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAAAGTTTGTTGAAGCTAAGGTTAATGTTGGTGGGATTCGCTCTTGGATTGCAACAGGAAGAAAAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGATGAGAAGACGCAGATATATGCAAAGACATCATATCTGGGCAAGGTTCTTTCTGACAGAAGGATCGATTCATGCAAGGGGACAGAAGTTTGGAGTGGAACGGAAGTAATTACTACACAGGGGACTATATCAATGAGCGTGGAAATTCATGGATGTGCACTATTTGTTCTAAATTGCGACTAG 1992 0.4267 MKLDICKYLTVVGTLFGGTDVLAMMKCFSLCLVSFWVLLALCLLSVSSQNISESSLQQASLPPRGWNSYDSFCWTISEDEFLQSAEIVSQRLKAHGYEFVVVDYLWYRKKIKGAYPDSLGFDVIDEWGRMLPDPGRWPSSTGGKGFSEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWHAKDIAIPERACAWMPHGFMSVNTKLGAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLELNEISYVSEVLSALNRPIVYSLSPGTSVTPTMAKDVSGLVNMYRITGDDWDSWGDVRAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRFSRLTLEEKRTQMTLWSLAKSPLMYGGDVRKIDPTTYELITNPTLLEINFFSSNNMEFPYITSSNNLKHLGGKKQRPKHGTKASYTHSLGLSGCSEPKASGWSIESINQYLERICWKKSVENQHQAPFCVNKREIQLRLDGESMNQEEYRGKHQLVATDRMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWELNSNGTMVNSYSGLCATVKFVEAKVNVGGIRSWIATGRKGEIYLAFFNLSDEKTQIYAKTSYLGKVLSDRRIDSCKGTEVWSGTEVITTQGTISMSVEIHGCALFVLNCD* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03273 663 Gene3D - 576 662 IPR013780 -
Lapu3g03273 663 CDD GH27 62 407 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 SUPERFAMILY Glycosyl hydrolase domain 580 661 - -
Lapu3g03273 663 Gene3D Aldolase class I 53 409 IPR013785 -
Lapu3g03273 663 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 34 662 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 Pfam Alpha galactosidase A 232 407 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 PRINTS Glycosyl hydrolase family 27 signature 365 386 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 PRINTS Glycosyl hydrolase family 27 signature 150 171 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 PRINTS Glycosyl hydrolase family 27 signature 56 75 IPR002241 GO:0004553|GO:0005975
Lapu3g03273 663 SUPERFAMILY Ricin B-like lectins 513 574 IPR035992 -
Lapu3g03273 663 SUPERFAMILY (Trans)glycosidases 59 407 IPR017853 -
Lapu3g03273 663 Pfam Alpha galactosidase C-terminal beta sandwich domain 582 660 IPR041233 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03273 Lapu-Chr3 55978396 55984363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03273 22 495 Glycoside Hydrolase AT3G26380 65.272 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03273 - - gmx:100783705 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03273 3 55978396 55984363 Lapu3g03273 3 55978396 55984363 ECH
Lapu3g03273 3 55978396 55984363 Lapu6g00134 6 1028892 1034889 PCT