Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00130 ATGCATGATGTGTGCGTTTTGGAGTTGCAGATAGAGACTTGGACAATTTTGGTTGCTATTCTGTGCATTTTGGTGTTTGTTGTGAAGGAGTTTGTTATGGGAGGCAAGAATTCAAAAGAAAGTGGTAGAAGGTATGAATTTGGTGCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGATACCCACCACAATCACCATATCCTTCTTATCAAACACCTCGGCACCAGCATGCATCAGCATCAACTCCATTTTATGATTATGCTCAGCCAAAAAGGAAGTTGGATAGGAAGTATTCAAGGATAGCTGATAATTACCGTTCCTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATAGAAAAAGTTTACATGACATTGGAAGTGGTCAAAACCCGTATGAGCATGCGATTTCTATTATTGGGAAAACTTTATCCGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGATCAAGATGTATTTAGTTTCTTTTCGGAAGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTATCACGATACAGACAAATTATTCCTTACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAGTATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGTGTTGACACACAACATGGCAACTTAAGTCCACAAGAGAAGAACACAATAGATGCAATAGTTAAAGCAAGTGAGTATCCACTGTCAATAGTTTTAGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACAAAGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTCTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCATATTGGGTGCACGGAGGGGACATTCACCAGATAGAGTTGCTCTACCCCCACCTCTTTATGGTAGGACTTCTTCCAGCTTCACCACAAAATCGACACGGTCAAACAGTTTTCAGCAGAGGGCACCTACACATACCAGCTATGATAACAGTGTTCACACTGAGGCATCTGCAAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTTACCAATGCGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAAGACCTCCAATTCTGTCCCATTTGCCGCAGCACAATCCACACAAGAATAAAGCTTTACTAG 1407 0.408 MHDVCVLELQIETWTILVAILCILVFVVKEFVMGGKNSKESGRRYEFGASSSSWDNNNYGGYPPQSPYPSYQTPRHQHASASTPFYDYAQPKRKLDRKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEHAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLSRYRQIIPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGNLSPQEKNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTKNVDSTRKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVALPPPLYGRTSSSFTTKSTRSNSFQQRAPTHTSYDNSVHTEASASSLYDNKVCPICLTNAKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIKLY* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00130 468 MobiDBLite consensus disorder prediction 380 408 - -
Lapu6g00130 468 SUPERFAMILY vWA-like 124 307 IPR036465 -
Lapu6g00130 468 SUPERFAMILY RING/U-box 418 464 - -
Lapu6g00130 468 MobiDBLite consensus disorder prediction 368 408 - -
Lapu6g00130 468 Pfam Zinc finger, C3HC4 type (RING finger) 422 462 - -
Lapu6g00130 468 SMART VWA_4 123 326 IPR002035 -
Lapu6g00130 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 468 IPR013083 -
Lapu6g00130 468 Pfam Copine 148 361 IPR010734 -
Lapu6g00130 468 ProSiteProfiles Zinc finger RING-type profile. 425 458 IPR001841 -
Lapu6g00130 468 PANTHER COPINE FAMILY PROTEIN 1 77 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00130 Lapu-Chr6 1002195 1006315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00130 K16280 - gmx:100798816 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03267 3 55936370 55941453 Lapu6g00130 6 1002195 1006315 PCT