Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03267 ATGCTTCTAGAGCTGGAGACTTGGACTGCTTTGGTTGTTTTGTTTTTGCTTGTGTTAATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCGAAAGTGTCTGAAAGAAGACGTGTTTCATCTTATGGATCTGCTGGTTCTTCGTCTTCATGGGAAAACTATGGATACCCTCAGACTCCAAATGCTTACCCACAACAAAATGTTTATCATACGCCTCTTCATAACCGTGCCCCGACTCCATTCCACGACTATTCTCAGCCAAAAAGGAAGTTGGATAGGAGATACTCCAGAATATCTGATGATTACAATTCACTGGATGAGGTTACCGCTGCTCTTTCACACGCTGGACTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAATGGACAGGGAAGAGATCATTCAACCGAAAAAGCTTACATCATATAGGAAGTGATCATAATCCTTATGAACAAGCAATCTCGATTATTGGGAAAACTTTAAGTGCTTTTGATGAGGATAACTTGATTCCTTGTTTTGGTTTTGGAGATGCATCAACGCACGATCAAGATGTCTTTAGTTTTCATTCAGATGAGAGGTTCTGCAATGGATTCGAGGAAGTTCTGTCAAGATATAGAGAGATTGTTCCTTGCTTGCGTCTAGCAGGACCCACTTCGTTTGCTCCTATTATTGAGATGGCCATGACTATAGTTGAACAAAGTGGCGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACGCAACATGGCCAGTTAAGTCCACAAGAACAGAAGACAATTGATGCAATTGTAAAAGCGAGCGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGAGATGGACCCTGGGAAATGATGAAGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTTAAGGAGTGTAGATTCAAGAAGAAAAGAGACAGACTTTGCTCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACTATAGATCTTGGCATATTAGGTGCACGGAGGGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTAATTATGAGAGGACTTCTAGCAGCAGCACGTCATCTTTTCGTTCAAACAGTTTTCAGCAAAGTACACCAACATATCCTGGCTACGATAATGTTAACACGGCATCATCTTCAGGTGGCTTATATGATAACAAGGTTTGTCCAATTTGTCTTACTAACGGGAAGGATATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAACCTTGAATTCTGCCCCATATGCCGAAGCACAATCACTACAAGAATAAAGCTTTACTAG 1389 0.4125 MLLELETWTALVVLFLLVLILKESIMGGKSSKVSERRRVSSYGSAGSSSSWENYGYPQTPNAYPQQNVYHTPLHNRAPTPFHDYSQPKRKLDRRYSRISDDYNSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYREIVPCLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWEMMKEFDDNIPARAFDNFQFVNFTEIMLRSVDSRRKETDFALSALMEIPSQYKATIDLGILGARRGHSPDRVPLPPPNYERTSSSSTSSFRSNSFQQSTPTYPGYDNVNTASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGENLEFCPICRSTITTRIKLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03267 462 MobiDBLite consensus disorder prediction 374 402 - -
Lapu3g03267 462 SUPERFAMILY vWA-like 121 303 IPR036465 -
Lapu3g03267 462 MobiDBLite consensus disorder prediction 362 402 - -
Lapu3g03267 462 PANTHER COPINE FAMILY PROTEIN 1 45 439 - -
Lapu3g03267 462 MobiDBLite consensus disorder prediction 62 90 - -
Lapu3g03267 462 SUPERFAMILY RING/U-box 413 458 - -
Lapu3g03267 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 462 IPR013083 -
Lapu3g03267 462 SMART VWA_4 119 322 IPR002035 -
Lapu3g03267 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
Lapu3g03267 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 457 - -
Lapu3g03267 462 Pfam Copine 144 357 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03267 Lapu-Chr3 55936370 55941453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03267 K16280 - gmx:100800161 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03267 3 55936370 55941453 Lapu3g03267 3 55936370 55941453 ECH
Lapu3g03267 3 55936370 55941453 Lapu6g00130 6 1002195 1006315 PCT