Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00117 ATGGAGGGGTTGGATAGGTTCCTTGTGGCGACAAGCACCATAGGCTTCATTTGTGTGTGCAAGGCGTTTCTCAATTTTCTGAAGTGGGTGTGGGTAATGTTCTTGAGGCCGCCAAAGAACCTCAAAGAATATGGTTCATGGGCTATAATCACTGGATCCACTGATGGAATTGGCAAGGCCATGGCCTTTGAATTGGCCTCCAAGGGACTCAACCTTCTCTTGGTTGGTCGAAACCCTCTGAAACTTGAGGCAACATCGAAGGAAATAAGAGAGAGACATGGTGTTGAGGTCAAGTTTGTGGTCATAGATATGCAAAAAGTTGGTGGAGAGGAAATAGCCAAGAGAATAGAGGAAGCAATAGATGGTTTAGATGTAGGTTTGCTTGTTAATGGTGCTGGCTTGGCTTACCCTTATGCAAGATTCTTTCATGAGGTTGATTTGGAGCTTATGGATGCTATTGTAAAAGTGAATGTGGAGGCAACAACCTGGATCACAAAGGCTGTGATTCCATCCATGATCAAGAAGAAAAAGGGTGCAATAGTGAACATTGGTTCTGGTTCCACTGTGGTGCTTCCTTCATACCCTCTAGTCACTCTCTATGCTGCTACAAAAGGATACCTTGCAATGTTCTCCAGATGCATCAGTTTGGAATATAAGCATCAAGGAATTGATATCCAATGTCAGGTTCCATTGTTTGTGTCAACAAAGATGACCAAAATGAAGAGATCAGTTTTTGTGCCAACACCAGATTTGTATAGCAAAACTTGCACAAGGTGGATTGGCTACGAAAAACTGGTTGAGCCATACTTTCTCCATTCTGTGCAAGGTTCTCCTGAGCCATACCATCATCTTTCTCATCATTCACACTACCCACGTCCCAAAATGGAATGCTGTATAATCTCCAGGCTCAAGACCCAACCCATATGGTTCGCGCTGTTCTTTCTTGTCGGATTATTAACGATTCTGAAACTAGTTTTCATTGTAATCAGATGGGTCTACGTCAATTTCCTTAGAACTCCCAAAAACCTTAGAAAGTACGGATCTTGGGCTCTCGTCACTGGACCCACTGACGGCATTGGAAAGAGCTTCGCTTTCGAGCTCGCGCGCAAAGGCCTCAACCTCGTACTCGTCGGTCGGAACCCCGACAAGCTCAAAGACGTGTCGGATTCGATCGCCGCCAAGTTCGGAAAAACCGAGGTCAGGACTGTGGTGGTCGATTTCTCGGGGGATCTGGACGAGGGTGTCGCCAAGATTAGCGAAGCGATTGAAGGGTTGGACGTTGGAGTGCTGGTTAACAATGTGGGAGTTTCGTACCCTTACGCCAGGTTCTTCCATGAAGTGGACGAGGGGCTTCTCAACAACCTTATTAAGGTTAACGTTGTTGGAACCACCAAGGTCACGCAAGCTGTTCTGCCGGGGATGCTGAAGAGAAAGAGAGGAGCGATTGTTAACATTGGTTCTGGTGCTGCTATTGTGATTCCTTCCGATCCCCTTTATGCTGTTTATGCCGCCACCAAAGCGTACATCGATCAGTTTTCCAGATGTCTCTATGTTGAATACAAAAAGAGTGGAATTGACGTTCAGTGTCAGGTTCCGTTATATGTGGCAACCAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCTGGTGTTCGATGGATAGGTTACGAGCCTCGATGCACGCCATACTGGCCACACACTCTTCTCTGGGCGGTGGCTAGCTCATTACCTGAATTTGTTGTTGATGCTTGGCGCCTGTGGTTCTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAAGAGTCCACCAAGAAGGAATAG 1845 0.4634 MEGLDRFLVATSTIGFICVCKAFLNFLKWVWVMFLRPPKNLKEYGSWAIITGSTDGIGKAMAFELASKGLNLLLVGRNPLKLEATSKEIRERHGVEVKFVVIDMQKVGGEEIAKRIEEAIDGLDVGLLVNGAGLAYPYARFFHEVDLELMDAIVKVNVEATTWITKAVIPSMIKKKKGAIVNIGSGSTVVLPSYPLVTLYAATKGYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMKRSVFVPTPDLYSKTCTRWIGYEKLVEPYFLHSVQGSPEPYHHLSHHSHYPRPKMECCIISRLKTQPIWFALFFLVGLLTILKLVFIVIRWVYVNFLRTPKNLRKYGSWALVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAAKFGKTEVRTVVVDFSGDLDEGVAKISEAIEGLDVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLKRKRGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGVRWIGYEPRCTPYWPHTLLWAVASSLPEFVVDAWRLWFCLGIRKRGQRKESTKKE* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00117 614 Gene3D - 41 260 - -
Lapu6g00117 614 Gene3D - 343 560 - -
Lapu6g00117 614 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 279 IPR036291 -
Lapu6g00117 614 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 267 - -
Lapu6g00117 614 Pfam short chain dehydrogenase 47 242 IPR002347 -
Lapu6g00117 614 Pfam short chain dehydrogenase 349 541 IPR002347 -
Lapu6g00117 614 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 343 571 - -
Lapu6g00117 614 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 346 604 IPR036291 -
Lapu6g00117 614 PRINTS Glucose/ribitol dehydrogenase family signature 474 490 IPR002347 -
Lapu6g00117 614 PRINTS Glucose/ribitol dehydrogenase family signature 523 540 IPR002347 -
Lapu6g00117 614 PRINTS Glucose/ribitol dehydrogenase family signature 349 366 IPR002347 -
Lapu6g00117 614 PRINTS Glucose/ribitol dehydrogenase family signature 425 436 IPR002347 -
Lapu6g00117 614 PRINTS Glucose/ribitol dehydrogenase family signature 502 521 IPR002347 -
Lapu6g00117 614 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 425 436 IPR002347 -
Lapu6g00117 614 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 480 488 IPR002347 -
Lapu6g00117 614 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 502 521 IPR002347 -
Lapu6g00117 614 CDD 17beta-HSD1_like_SDR_c 45 277 - -
Lapu6g00117 614 PANTHER RH59310P 309 613 - -
Lapu6g00117 614 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Lapu6g00117 614 CDD 17beta-HSD1_like_SDR_c 347 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00117 Lapu-Chr6 900848 909019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00117 295 614 Lipid Metabolism Gene Families AT1G67730 65.312 9.71e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00117 K10251 - gmx:100814139 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03259 3 55888403 55890712 Lapu6g00117 6 900848 909019 PCT