Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03259 ATGGCTATAGGAGCATGTAACAGGGTTCATGACTCTGTGCTCATAATCTCATGCCTCGGTTTCATCGTCACGCTCCACCTCCTCCTCTCCCTCTTCGCATGGCTCTTCCGAACCTGCTTCCGACCCGAGAAGAATCTCCTCCGAACCTACGGTTCCTGGGCTCTGGTCACCGGAGCCACCGGCGGCATCGGAAAGGCCTTCGCCTGGCAGCTGGCAGAGCGAGGGCTCAACCTCATCCTCGTCAGCAGAAGCTCCCAGAAGCTGGAAGCTGTTGCGCGTGAAATCAAGGCGAAGCATCCAATGGCGCGCGTGAAGGTGGTGGAGATGGACTTCGCGTGCGGGGATCTGTCGGAGGGGCTGCGGCGCGTGGAGGAGGCGATTGAGGGGTTGGATGTTGGGGTGTTGGTGAACAACGTGGGAATCACGTATCCGAAAGCGATGTTTTTTGACGAAGTGGAGGAGAGTGTGTGGAGGAAGATTGTTAGGGTGAATGTGGAAGGAACAACAAAAGTAACGAAATGTGTTTTGCGTGGGATGTTGGAGAGGAGAAAGGGTGCAATCGTTAACATTGGCTCGGGTGCTGCGGTGGTTCTACCTTCTCATCCTCTCTTTGCCGTCTATGCTGCCACCAAGGCTTACGTGGATCAATTTTCAAGATCTCTGTACGTGGAGTACGGACAATATGGGATACATGTGCAATGTCAGGTACCGCTGTATGTTGCAACGAAGATGGTATCAAGGGTGGCTTGCATTGAGAGAGAATCATTGTTTATACCAACAGCAGAGGCATATGCAAGAGCAGCAATTGGTGAAATTGGGTACAAACCAAAGTGCATACCTTACTGGTCTCACTCACTTCAGAGCTTCTTGGCACAGTTAATCCCTCACCCTCTGCTTCATGCTTGGCGACTCTCCATCGGTATTCGGCGCAGGAATAATCAGAACCAATCCTCATTCACTTGA 963 0.5223 MAIGACNRVHDSVLIISCLGFIVTLHLLLSLFAWLFRTCFRPEKNLLRTYGSWALVTGATGGIGKAFAWQLAERGLNLILVSRSSQKLEAVAREIKAKHPMARVKVVEMDFACGDLSEGLRRVEEAIEGLDVGVLVNNVGITYPKAMFFDEVEESVWRKIVRVNVEGTTKVTKCVLRGMLERRKGAIVNIGSGAAVVLPSHPLFAVYAATKAYVDQFSRSLYVEYGQYGIHVQCQVPLYVATKMVSRVACIERESLFIPTAEAYARAAIGEIGYKPKCIPYWSHSLQSFLAQLIPHPLLHAWRLSIGIRRRNNQNQSSFT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03259 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 269 IPR036291 -
Lapu3g03259 320 PRINTS Glucose/ribitol dehydrogenase family signature 228 245 IPR002347 -
Lapu3g03259 320 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
Lapu3g03259 320 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Lapu3g03259 320 PRINTS Glucose/ribitol dehydrogenase family signature 53 70 IPR002347 -
Lapu3g03259 320 PRINTS Glucose/ribitol dehydrogenase family signature 179 195 IPR002347 -
Lapu3g03259 320 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 47 279 - -
Lapu3g03259 320 Pfam short chain dehydrogenase 53 247 IPR002347 -
Lapu3g03259 320 PIRSF 11-beta-HSD1 5 317 - -
Lapu3g03259 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Lapu3g03259 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 IPR002347 -
Lapu3g03259 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 193 IPR002347 -
Lapu3g03259 320 CDD 17beta-HSD1_like_SDR_c 51 295 - -
Lapu3g03259 320 PANTHER RH59310P 14 315 - -
Lapu3g03259 320 Gene3D - 45 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03259 Lapu-Chr3 55888403 55890712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03259 19 312 Lipid Metabolism Gene Families AT1G24470 56.949 4.61e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03259 K10251 - rvl:131309994 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03259 3 55888403 55890712 Lapu3g03259 3 55888403 55890712 ECH
Lapu3g03259 3 55888403 55890712 Lapu6g00117 6 900848 909019 PCT