Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00609 ATGGATCGCGGCATCTATGGCGCCTTCGGCCTCCGCATCTTCTATAGTGTTCTCCTGGTGCTCTATGTTTTGCCTCAGGCGTTAACGTTGCGAGAGTCTTCTCCCTCGTCACCGACGGCTCAGATTAACTCCAACTCAATCTTAGTTGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTTGTGGAAAAAGCCATGCTGTTACAGAAGCTAGAAGACGCAGTGGCAACATACAACATAACAATCTTCGCTCCAACCAACCAAGCTTTGGACCGCAACCTCGACCCTGATTTCAAGCACTTCCTTCTCCAACCCGCCAATCTTAACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCATCCGAATCGGATCCAAAACCCTAACCCGCCGCGTCACCACTCTTTCCGACCACCAAATCCGCCTCTCCGCAAACCTCACCACCGTCGACCAGGCCCGCGTCACCCACCCGGATGTCCTCATCCGACCCGACGGCGTCATCCACGCCATCGACCGCCTCCTCCTCCCACGCTCCGTCGAGGACGACTTCAACCGCCGCCGCACCCTCCGCTCCATCTCCGCCGTCAAACCCGAGGGAGCCCCGGAAGTCGACCCGAGAACCCACCGTCTCAAAAAACCTCCCCCGCCTGCGAAACCTGGCTCCCCGCCGGCTCTTCCGATCTACGACGCCATGTCTCCGGGACCATCCCTGGCTCCGGCGCCGGCGCCGGGGCCAGGCGGACCGCACCACCACTTCAATGGTGAGAGACAGGTGAAGGATTTCATCCACACGCTCCTCCACTACGGTGGATACAACGAGATGGCAGACATTCTCGTGAATCTTACCTCGTTGGCAGTTGAAATGGGTCGTTTAGTGTCTGAGGGTTACATTCTCACCGTTTTAGCTCCGAACGACGAAGCGATGGCGAAGTTAACGACAGAACAGTTGAGTGAACCGGGTGCACCGGAGCGGATAATGTACTATCACATAATACCGGAATACCAGACCGAAGAGAGCATGTACAACGCGGTTCGAAGGTTCGGGAAGGTTCGTTACGATACTCTACGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCCGTTAAATTCGGACACGGGGATGGGTCTGCATATTTGTTCGACCCGGATATTTACACGGATGGTCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGATTGATGAGGAGGATGAGGCAGAGCGGGTTAAACCCGCTACCCGTTCGGGTCAACCCACTGCCAAAGTCGTTGTCAGGCACAGGAGAGGAAAATTACTCGAAGCAGCATGCTGGATGCTTGGAACCTTTGGACAACATTCTAGATTCACCTCTTGTCAATGA 1377 0.5563 MDRGIYGAFGLRIFYSVLLVLYVLPQALTLRESSPSSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEDAVATYNITIFAPTNQALDRNLDPDFKHFLLQPANLNSLQTLLLSHIIPIRIGSKTLTRRVTTLSDHQIRLSANLTTVDQARVTHPDVLIRPDGVIHAIDRLLLPRSVEDDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPAKPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYILTVLAPNDEAMAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPIDEEDEAERVKPATRSGQPTAKVVVRHRRGKLLEAACWMLGTFGQHSRFTSCQ* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00609 458 MobiDBLite consensus disorder prediction 216 231 - -
Lapu5g00609 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 13 455 IPR044654 -
Lapu5g00609 458 MobiDBLite consensus disorder prediction 192 256 - -
Lapu5g00609 458 ProSiteProfiles FAS1/BIgH3 domain profile. 43 176 IPR000782 -
Lapu5g00609 458 FunFam Fasciclin-like arabinogalactan protein 16 255 406 - -
Lapu5g00609 458 Pfam Fasciclin domain 55 178 IPR000782 -
Lapu5g00609 458 Pfam Fasciclin domain 299 405 IPR000782 -
Lapu5g00609 458 SUPERFAMILY FAS1 domain 239 406 IPR036378 -
Lapu5g00609 458 SMART fasc_3 301 406 IPR000782 -
Lapu5g00609 458 SMART fasc_3 82 179 IPR000782 -
Lapu5g00609 458 Gene3D FAS1 domain 26 179 IPR036378 -
Lapu5g00609 458 Gene3D FAS1 domain 284 405 IPR036378 -
Lapu5g00609 458 SUPERFAMILY FAS1 domain 44 179 IPR036378 -
Lapu5g00609 458 ProSiteProfiles FAS1/BIgH3 domain profile. 260 388 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00609 Lapu-Chr5 5623829 5627467 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00609 - - gmx:100782264 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00609 5 5623829 5627467 Lapu11g00260 11 5534379 5539125 PCT