Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00260 ATGGATTGCCGCATCTATGGCGTCACGATCTTTCTCTTCCTGCTTCCAACCCTCGCATTCTCTCTCTCACAGGGCCAAATAAACTCAAACTCAATCCTGGTGGCTCTGTTGGACTCGCATTATACCGAAGTTGCTGAGCTAGTGGAAAAGGCCATGCTCCTACAAACGCTCGAAAACACGATAATGACCCACAACATCACAATCTTCGCACCCAGAAACGAAGCCCTCGAACGCGATCTGGACCCTGATTTCAAGCGCTTCCTTCTTGAACCCCGCAACCTCCAGTCTCTCCAAACCCTTCTTATGTCCCACATCGTCCCCAAAAGAATCACGAAATCCGGGTTAAGTAACTCGGGTCGACCCACCCGACACAGAACCCTCGCTACACATCACCACCTCACTCTCCAGACCATTAACTCCACTCACTGGAATGTCGACTCCTCCTGGGTCACCCACCCGGATTCCCTTACCCGACCCGACGGCGTCATCCACGGCATCGACACGCTCCTCATCCCTCGCTCCGTACAAGACGACTTCAACCGCCGCCGAAACCTCATCTCCATCGCCGCCGTGAAACCCGAACCCGCTCCGGAGGTCGACCCGCGCACCCACCGCTTGAAAAAGCCGGCTCCCCCGTCGCCGGCAGGCTCCCCGCCTGCTCTGCCGATTTACGACGCGATGGCACCGGGACCCTCCCTGGCGCCGGCGCCGGCGCCTGGACCGGGTGGACCCCATCACCACTTCAACGGCGAGAGACAGGTGAAAGATTTCATCCAAACGCTCCTCCACTACGGCGGCTACAATGAAATGGCGGATATTCTCGTAAACTTAACGTCGCTGGCGACGGAGATGGGACGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAACGACGAAGCAATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTTTCACTTTATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTCCGTTACGACACATTACGGTTGCCACACAAGGTGACGGCGCAGGAGGCTGATGGCTCCGTTAAGTTCGGGCACGGGGACGGGTCCGCGTATTTGTTCGACCCGGATATTTACACGGATGGACGGATCTCCGTTCAGGGAATCGACGGCGTTTTGTTTCCGCCTCAGGAGGATGAGGCTGGGCCGGAGACCCGGGCCCAACCCGCTAAGGTCGTTGTTAAGCAGAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGCTCAGAATTCCAGATTCATCTCTTGTCAATAA 1341 0.557 MDCRIYGVTIFLFLLPTLAFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTIMTHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKSGLSNSGRPTRHRTLATHHHLTLQTINSTHWNVDSSWVTHPDSLTRPDGVIHGIDTLLIPRSVQDDFNRRRNLISIAAVKPEPAPEVDPRTHRLKKPAPPSPAGSPPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYFHFIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPQEDEAGPETRAQPAKVVVKQRRGKLLETACWMLGSFAQNSRFISCQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00260 446 Gene3D FAS1 domain 247 400 IPR036378 -
Lapu11g00260 446 SMART fasc_3 295 400 IPR000782 -
Lapu11g00260 446 SMART fasc_3 67 173 IPR000782 -
Lapu11g00260 446 Gene3D FAS1 domain 33 173 IPR036378 -
Lapu11g00260 446 Pfam Fasciclin domain 40 172 IPR000782 -
Lapu11g00260 446 Pfam Fasciclin domain 279 399 IPR000782 -
Lapu11g00260 446 MobiDBLite consensus disorder prediction 194 250 - -
Lapu11g00260 446 FunFam Fasciclin-like arabinogalactan protein 16 249 400 - -
Lapu11g00260 446 SUPERFAMILY FAS1 domain 233 400 IPR036378 -
Lapu11g00260 446 ProSiteProfiles FAS1/BIgH3 domain profile. 254 382 IPR000782 -
Lapu11g00260 446 ProSiteProfiles FAS1/BIgH3 domain profile. 28 170 IPR000782 -
Lapu11g00260 446 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 22 439 IPR044654 -
Lapu11g00260 446 SUPERFAMILY FAS1 domain 31 173 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00260 Lapu-Chr11 5534379 5539125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00260 - - gmx:100790599 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00609 5 5623829 5627467 Lapu11g00260 11 5534379 5539125 PCT