Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00564 ATGACCGAGGTCCTCCTCTCCCCACCCCATTTTGCTTCTTCTTCATCACCACCAACAACAAAGACAAGGACAACCTCAACCACAACAAACTCAACTCCTTCTCCCTCTTCATTCTCTCGCCATGCCTTTCTCCGACCACACCTCTCTCTCTTGGCTCTTCTATTGACCCTTCTCAGGAAATCCTTCTTTCCCCGCAAAACCATCCCCTCCATCATGGACATAGGCTCACCAACTAACGTACGCCATGTTGCTCATGTCACCTTTGATAGGTTCAACGGTTTTTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGGCCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCTAGAGGGAACAGTGTGCCAACTATTCTGCTATTGATGCAAAGGCATCTGTATGCTCAAGGGGGGTTGCAGGTGGAGGGGATTTTCAGAATTAACCCGGATAATGGTCAAGAGGAACATGTCAGGGATCAATTGAATATGGGAGTGGTCCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCCACAGGCATTCTGGATTCATTATCACCGGAGCAGGTCATGCAATGCCAGACTGAGGAGGAGTGTGCTGAAGTAGTGAGACATCTACCTCATACTGAAGCTTCACTCTTGGACTGGGCCATCAATTTGATGACTGATGTTGTCCAACATGAAAATGTTAATAAGATGAATGCACGTAACATTGCCATGGTTTTTGCACCAAACATGACTCAGATGGCCGACCCTATATCTGCACTGATGTATGCTGTCCAAGTTATGAACTTCTTGAGGACACTCATATTAAGGACACTGCGAGAAAGAAAGGATTCTGTGGTAGAATCTTATCCAAGATTTTATATAGAACCTTCTGATAGTAATGGAAACCAAAGACTTTTGCAGTCCTTCCAGCAAGATACTCCTGCAGAAAATGAAGAGGTCCATGGAAACATTGTTGTAGAGAAAACTGGCTTAGAGTGTTCTCCTGGATCAGTCCAAAACAACTCAACTGAAGGAGAACCTGGCAGTCCGGCAAACACTTCTGAGAATCTTCTTAGCAATGAGGAATTATATTGTGAGTTTCCACCAGTAGGAAACATGGGAAAGGGTAAAAGTGGCCAATCAAGTAAATCAAATGCTAGAAAAGAGTCCAAAAAGACCAGAGGCAGCAACCTGTGA 1251 0.4476 MTEVLLSPPHFASSSSPPTTKTRTTSTTTNSTPSPSSFSRHAFLRPHLSLLALLLTLLRKSFFPRKTIPSIMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYAQGGLQVEGIFRINPDNGQEEHVRDQLNMGVVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEEECAEVVRHLPHTEASLLDWAINLMTDVVQHENVNKMNARNIAMVFAPNMTQMADPISALMYAVQVMNFLRTLILRTLRERKDSVVESYPRFYIEPSDSNGNQRLLQSFQQDTPAENEEVHGNIVVEKTGLECSPGSVQNNSTEGEPGSPANTSENLLSNEELYCEFPPVGNMGKGKSGQSSKSNARKESKKTRGSNL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00564 416 SMART RhoGAP_3 133 296 IPR000198 GO:0007165
Lapu5g00564 416 MobiDBLite consensus disorder prediction 349 416 - -
Lapu5g00564 416 Gene3D CRIB domain 71 104 IPR036936 -
Lapu5g00564 416 MobiDBLite consensus disorder prediction 400 416 - -
Lapu5g00564 416 CDD CRIB 72 112 - -
Lapu5g00564 416 Pfam RhoGAP domain 136 270 IPR000198 GO:0007165
Lapu5g00564 416 FunFam Rho GTPase-activating protein 5 104 297 - -
Lapu5g00564 416 CDD RhoGAP 136 292 - -
Lapu5g00564 416 ProSiteProfiles CRIB domain profile. 74 87 IPR000095 -
Lapu5g00564 416 ProSiteProfiles Rho GTPase-activating proteins domain profile. 119 304 IPR000198 GO:0007165
Lapu5g00564 416 PANTHER MKIAA1688 PROTEIN 15 411 IPR044785 GO:0005096
Lapu5g00564 416 Pfam P21-Rho-binding domain 73 100 IPR000095 -
Lapu5g00564 416 SUPERFAMILY GTPase activation domain, GAP 114 293 IPR008936 -
Lapu5g00564 416 SMART PBD_5 74 108 IPR000095 -
Lapu5g00564 416 MobiDBLite consensus disorder prediction 1 38 - -
Lapu5g00564 416 Gene3D Rho GTPase activation protein 107 303 IPR008936 -
Lapu5g00564 416 MobiDBLite consensus disorder prediction 7 38 - -
Lapu5g00564 416 MobiDBLite consensus disorder prediction 351 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00564 Lapu-Chr5 5124220 5128351 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00564 - K20642 gmx:100776004 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00564 5 5124220 5128351 Lapu11g00313 11 6168651 6172798 PCT