Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00313 ATGACCGAAGTGCTTCATTTCTCTTCTTCTTCGTCGCCAACCGCTTCTTCCTCTGATGGCATTCTAATTGTCTCCGCCGAGCAAGAACCGGCGCCACCCCCGTCTGCGGTGGTGGAGGGGTTTGCTATGGTCACCGACTGTGAGGCGCGCGGGGTCAAGGATAGGAGGCAGCAGGAGCTGTCGCTGCTGGCCATTCTTGTGACCCTTTTGAGGAAATCGTTGATTGCCTGCAAGAGTGATGGGAGAGGTGACCTCTGCGCCATGGAGATTGGCTGGCCTACTAACGTGCGCCATGTTGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCACGTGAGTTCGAACCCGAAGTCTCCACAAGGTCTCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACGCGAGAGGGAACAGTGTACCAACCATACTTTTACTAATGCAAAGGCACTTGTATGCTCTTGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCAAGAGGAGAATGTTAGGGATCAATTAAACAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTAGCTGGACTAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTGATGCAATGCCAGACTGAAGATGATTGTGCTGAACTGGTGAGGCAGCTACCTCACACCGAAGCTTCCCTCTTGGACTGGGCTATCAATCTGATGGCTGATGTTGTCCAAGAGGAACACCTGAATAAGATGAATACACGCAACATCGCCATGGTTTTTGCACCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTGAAGACACTTATATTAAGGACACTGCGAGAAAGAAAGGATTGTGTGGTAGAATCTTCTCCTGGATTTTGTTTAGAGCCTTCTGATGAGAATGGGGATCACAGTCTTTTGGAGTCCTGCCAGCAAGATGATGCTGCCACTGAAAGTGAAGAGTCTGGGGAAACCTTTGTTTCTGAGAAAACTGTATTAGAATGTTCCCCTGAATCTCTCCAAAACAAATATTCAACTGAAGGAGAATGTGGCAGTTTGATAGGCTCTCATGAGAATCTGGATTTTGAGGAGGAATTGTATTGTGAGTTTCCAACCAAAGGAAACATAGGAAAGAGTAAGAATGGACAATCAAGTCATTCCAGTGCTAAAATGGGGTCCAAAAGAACCAGAGGCCTGCAACCTGTAATCCATGCAACAATGGCTGTTGAGAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCAAGATCAGAGCGAATAGAAGCCTGGCGGTGA 1395 0.4681 MTEVLHFSSSSSPTASSSDGILIVSAEQEPAPPPSAVVEGFAMVTDCEARGVKDRRQQELSLLAILVTLLRKSLIACKSDGRGDLCAMEIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRSPSASATVFGVSTESMQLSYDARGNSVPTILLLMQRHLYALGGLQAEGIFRINADNTQEENVRDQLNRGLVPEDVDIHCLAGLIKAWFRELPTGVLDSLSPEHVMQCQTEDDCAELVRQLPHTEASLLDWAINLMADVVQEEHLNKMNTRNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLILRTLRERKDCVVESSPGFCLEPSDENGDHSLLESCQQDDAATESEESGETFVSEKTVLECSPESLQNKYSTEGECGSLIGSHENLDFEEELYCEFPTKGNIGKSKNGQSSHSSAKMGSKRTRGLQPVIHATMAVEKKGISNLSRIDSRSERIEAWR* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00313 464 MobiDBLite consensus disorder prediction 410 433 - -
Lapu11g00313 464 MobiDBLite consensus disorder prediction 337 362 - -
Lapu11g00313 464 PANTHER MKIAA1688 PROTEIN 2 374 IPR044785 GO:0005096
Lapu11g00313 464 CDD CRIB 88 128 - -
Lapu11g00313 464 Pfam RhoGAP domain 152 286 IPR000198 GO:0007165
Lapu11g00313 464 SUPERFAMILY GTPase activation domain, GAP 130 309 IPR008936 -
Lapu11g00313 464 Gene3D CRIB domain 87 121 IPR036936 -
Lapu11g00313 464 CDD RhoGAP 152 308 - -
Lapu11g00313 464 Gene3D Rho GTPase activation protein 122 317 IPR008936 -
Lapu11g00313 464 SMART RhoGAP_3 149 312 IPR000198 GO:0007165
Lapu11g00313 464 ProSiteProfiles CRIB domain profile. 90 103 IPR000095 -
Lapu11g00313 464 FunFam Rho GTPase-activating protein 5 120 313 - -
Lapu11g00313 464 MobiDBLite consensus disorder prediction 410 427 - -
Lapu11g00313 464 ProSiteProfiles Rho GTPase-activating proteins domain profile. 135 316 IPR000198 GO:0007165
Lapu11g00313 464 SMART PBD_5 90 124 IPR000095 -
Lapu11g00313 464 Pfam P21-Rho-binding domain 89 116 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00313 Lapu-Chr11 6168651 6172798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00313 - K20642 gmx:100775644 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00313 11 6168651 6172798 Lapu11g00313 11 6168651 6172798 ECH
Lapu5g00564 5 5124220 5128351 Lapu11g00313 11 6168651 6172798 PCT