Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00562 ATGGCAACTTCTTCTTTCTTCTTTGCTTTGCTATTGCTGTTTCTCACTTCTTCAGATTTGTTTCTGCAAATCCGTGGCCTTAACTATGGAATCAACTACGGGCAAATAGCCAACAACCTTCCATCTCCGACTCGTGTAGTCGGTCTTATAAAATCTCTGCAAGTCTCTAGAATCAGACTCTATGATGCTGATCCAAATGTTCTATCTGCATTCTCCAATTCAGATGTGGAATTCATCATAGGATTAGGGAACGAGGATATGCAGAGCGTGAGAGACCCTGCTAAGGCTCAGAGCTGGGTTCAACAGCATGTTCAACCTTACATTTCACAAACCAAAATCACTTGCATAACTGTAGGAAACGAGGTGTTTACCTACAACACTCAGCTCTCAGCATATCTCCTTCCCGCAATGCAAAGTGTGTATAATGCCCTTGTTAGTTTAGGACTAGAACAACAGGTTACTGTTACTACTGCTCATTCTTTCAACATTTTATCCACCTCATTCCCTCCTTCATCAGGTGCCTTCAGGCAAGATCTGCTACAATATATTCAGCCTCTCCTTAGCTTTCATGCCCAAATCAAATCACCCTTCCTAATTAATGCATATCCCTTTTTTGCATACAAGGACAACCCAAACCAAATTTCCTTAAATTATGTGCTGTTTCAGCCAAATGCAGGGTCTACTGATCCAGTTACAAATTTGCATTATGATAACATGTTGTTTGCTCAAATTGATGCTGTCTATGCTGCCATTAAAAAACTGGGGCATAGTGATATTGAAGTCAGGATTTCAGAAACTGGTTGGCCTTCTAAAGGTGACCCTAATGAAGTTGGAGCCACACCACAGAATGCAGAAATATATCATAGTAATCTGTTGAAAAAGATACAGCAGAATCAAGGGACTCCTGCAAAGCCATCTGTTCCAATTGATATTTTTGTCTTTGCACTTTTCAATGAGAATATGAAGCCTGGTCCTGCATCAGAGAGAAACTATGGCCTTTATTATCCTGATGGCAACCCAGTTTATAACATTGGATTACAAGGTTATCTCCCAGAAATGGTTATAGAGTCCAAAACTAACGTGTTGTCCATCAATTTTCTCGTATACATATTTACATTTTTGTCGCTCACTTGGGAGCTTTCAAGACATTGA 1152 0.4002 MATSSFFFALLLLFLTSSDLFLQIRGLNYGINYGQIANNLPSPTRVVGLIKSLQVSRIRLYDADPNVLSAFSNSDVEFIIGLGNEDMQSVRDPAKAQSWVQQHVQPYISQTKITCITVGNEVFTYNTQLSAYLLPAMQSVYNALVSLGLEQQVTVTTAHSFNILSTSFPPSSGAFRQDLLQYIQPLLSFHAQIKSPFLINAYPFFAYKDNPNQISLNYVLFQPNAGSTDPVTNLHYDNMLFAQIDAVYAAIKKLGHSDIEVRISETGWPSKGDPNEVGATPQNAEIYHSNLLKKIQQNQGTPAKPSVPIDIFVFALFNENMKPGPASERNYGLYYPDGNPVYNIGLQGYLPEMVIESKTNVLSINFLVYIFTFLSLTWELSRH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00562 383 SUPERFAMILY (Trans)glycosidases 29 344 IPR017853 -
Lapu5g00562 383 Pfam Glycosyl hydrolases family 17 30 344 IPR000490 GO:0004553|GO:0005975
Lapu5g00562 383 Gene3D Glycosidases 28 350 - -
Lapu5g00562 383 FunFam Glucan endo-1,3-beta-glucosidase 14 27 350 - -
Lapu5g00562 383 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 347 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00562 Lapu-Chr5 5112242 5116361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00562 79 378 Glycoside Hydrolase AT2G27500 65.894 3.99e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00562 - - gmx:100786020 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00562 5 5112242 5116361 Lapu5g00562 5 5112242 5116361 ECH
Lapu5g00562 5 5112242 5116361 Lapu11g00318 11 6202529 6206745 PCT