Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00546 ATGGAATTGGGAAGCATAATTCACTTCCTTCAGGATAAGACCATTTTAGTCACTGGTGCCACTGGCTTTCTTGCAAAAATTTTTGTGGAAAAAATATTGAGGGTTCAACCAAATGTGAAGAAACTTTACCTGCTTTTGAGAGTTAAAGATACTGAATCCGCTACTCAACGCTTAGATAACGAGATCATAGGGAAGGACTTGTTTAGATTGCTGAAGGAAAAACTGGGTACAAGATTCAATTCCTTTGTCTCAGAAAAGCTCACTCTGGTACCTGGAGACATTTCTCATGAGGACTTGAATTTGAAGAACTCCATTCTGAGGGAAGAGATTTGCAACCAAACAGATGTTATAGTTAATCTAGCTGCAACAACTAACTTCGATGAAAGATACGATGTTGCATTGGGTATAAACACATTAGGAGTTAAGCATGTGATGAGCTTCGCCAAAAACTGTGTAAAGCTGAAGGTGTTTGTCCATGTATCAACAGCTTATGTATGTGGAGAAAGAGGAGGACTGATACTAGAGGATCCACATCCCTTTGGTGTGTCACTAAATGGAGTGACTGGACTAGACATTGATATGGAAAAGAAGAAAGTAGAGAAGAAATTGAATGAGCTGAGAGAGGAGGGAGCCACAGAAGATGATATTGAATTGGCCATGAAGGACTTGGGAAGTAAAAGAGCAACGATGTATGGATGGCCAAACACGTACGTCTTTACAAAGGCAATGGGAGAAATGATTGTAGGAACTACAAAGGGAAACATGAATGTAGTAATTGTACGTCCCACAATCATTACTGGTACTTACAGAGAACCTTTCCCTGGTTGGATCGAAGGTTTAAGAACCATAGACAGCTTGATTGTTGCTTATGGTAAAGGAAAGTTAACTTGCTTCCTTGCTGATCTTAAGGCGGTTTTTGACGTGATACCAGCAGACATGGTGGTGAATGCAATCCTAGTGACCATGGTGGCTCATGCAAATCAACCTAGTGACATCATATACCATGTGGGTTCCTCTGTTGCAAATCCAGTTAGGTACCGTGATCTTCGAGAGTACTGTGCAAGATATTTCAATGAAAAACCTTGGATAAACAAGGATGGAAAGCCCATCAAAGTTGGCAAAGTTACCATATTGAGCAACATTGCTAGCTTCAACAAATATATGTACATTCGTTATCAGCTTCCCTTAAAGGGACTAGAGCTGGTGAATGCAGCTTCATGCCATTATTTTCAGGAAATGTGTCTCAACTTCAATAGTAAGATCCGCACTATCATGAGATTGGTTGACCTTTACAAGCCTTACTTGTTCTTCAATGGGATATTTGATAATATTAATACAGAAAAGTTATTATCAGTGGCAAGAGAAGGTGGAGTAGAGACGGAATTGTTTTACTTTGACCCAAAAATGATTGATTGGGAAGAGTATTTCATGAATATCCATTTTCCTGGAATCATAAAGTATGCTTTCAAGTGA 1473 0.3931 MELGSIIHFLQDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRVKDTESATQRLDNEIIGKDLFRLLKEKLGTRFNSFVSEKLTLVPGDISHEDLNLKNSILREEICNQTDVIVNLAATTNFDERYDVALGINTLGVKHVMSFAKNCVKLKVFVHVSTAYVCGERGGLILEDPHPFGVSLNGVTGLDIDMEKKKVEKKLNELREEGATEDDIELAMKDLGSKRATMYGWPNTYVFTKAMGEMIVGTTKGNMNVVIVRPTIITGTYREPFPGWIEGLRTIDSLIVAYGKGKLTCFLADLKAVFDVIPADMVVNAILVTMVAHANQPSDIIYHVGSSVANPVRYRDLREYCARYFNEKPWINKDGKPIKVGKVTILSNIASFNKYMYIRYQLPLKGLELVNAASCHYFQEMCLNFNSKIRTIMRLVDLYKPYLFFNGIFDNINTEKLLSVAREGGVETELFYFDPKMIDWEEYFMNIHFPGIIKYAFK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00546 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 489 IPR026055 GO:0080019
Lapu5g00546 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 366 IPR036291 -
Lapu5g00546 490 CDD FAR_C 422 489 IPR033640 -
Lapu5g00546 490 Pfam Male sterility protein 392 490 IPR033640 -
Lapu5g00546 490 Gene3D - 8 374 - -
Lapu5g00546 490 CDD FAR-N_SDR_e 13 361 - -
Lapu5g00546 490 Pfam Male sterility protein 17 318 IPR013120 -
Lapu5g00546 490 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00546 Lapu-Chr5 4927981 4930923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00546 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 62.105 1.48e-177 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00546 K13356 - gmx:100789566 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00546 5 4927981 4930923 Lapu5g00546 5 4927981 4930923 ECH
Lapu5g00546 5 4927981 4930923 Lapu11g00338 11 6410031 6413821 PCT