Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00338 ATGGAATTGGGAAGCATAATCCACTTCCTCGAGGGCAAGAACATTCTGGTCGTTGGTGCTGCTGGTTTTCTTGCCAAAATTTTTGTGGAGAAGATACTCAGAGTGCAACCAAATGTAAAGAAACTTTATCTTCTTTTTAGAGCCACAGGTGCTGAATCTGCCACTCGAAGATTGCATAACGAGATTATAGGAAAGGATCTCTTTAAATTATTGAAGGAAAACCTTGGTGCAAAGTTCAATAACTTTGTTTCAGAAAAGTTGATTCCTGTGCCTGGGGACATTTCTCAAGAGGGCTTGAATTTGAATGATCCTGTTCTACGGGAAGAAATTTGCAATCAAACTCATTGCATAATCAATTTTGCTGCAACAACCAAGTTTGATGAAAGATACGATGTTGCATTGGGAATAAATACATCAGGAGTGAGACATGTTATGAACTTCGCCAAAAATTGTATTAAGCTGAAAGTGTTTGTCCAGGTGTCGACAGCATATGTATGTGGTGAGAAAGAAGGACTGATAATGGAGGATCCATGCCAATTGGGTGTGTCTTTAAATGGAGTGCCTGGACCAGACATTGACCTGGAAATGAAAGTGGTGGAAGAGAAGTTGACCCAACTTCAACGAGAGGGAGCCACAGAGGATGATATTAAAATGGCCATGAAAGACTTGGGTATGAAAAGAGCAACTCTATATGGATGGCCAAACACATATGTCTTTACAAAGGCAATGGGAGAAATGCTTGTGGAATCTCTAAGGGAAAACATGTCTGCTGTTATTGTACGTCCTACAATGATTACCAGTACTTTCAGAGAACCTTTCCCTGGATGGGTCGAAGGAGTAAGAACCATAGACAGTTTAATCGTTGCTTATGGCAAAGGAAAATTAACATGCTTCGTTGCAGACATGAAGGCAATTTTTGATGTGATACCAGCAGACATGGTGGTGAATGCAATAATAACAACCATGGTGGCTCATGCAAATCAACCTTGTGATGATATCATATATCACGTGAGTTCCTCAGTTGAAAATCCAGTGAGATACCACAAGCTCACAGACTTCGGGTTTAGATATTTCAAGGCAAAACCATGGCTAAGCAAGGATGGAAATCCTATCAATGTTGGCAAAGTTACAGTGTTGGACAGCATGGCTAGCTTCAAGATATACATGTTCATTTGTTACTTGCTTCCCTTAAAGGTACTAGAACTAGTGAATGCTGTCTTTTGCCAATATTTTCAAAGGGTGTGCCTTGAAACCAGAAGGAAAATCCAAATAGTGATGCGATTCGTTGATCTTTACAGGCCCTACTTGTTCTTCAATGGCCTATTTGACAATATGAACACACAAAAGTTGCAAATAGCAGCAAGACAAGGAGGGGAAGAGATGGAATATTTGTTTAACTTTGATCCTAAAGTAATTGATTGGGACGATTACTTCATGAATATCCATATTCCTGGTATAGTCAAGTATAGCTCCAAG 1476 0.3977 MELGSIIHFLEGKNILVVGAAGFLAKIFVEKILRVQPNVKKLYLLFRATGAESATRRLHNEIIGKDLFKLLKENLGAKFNNFVSEKLIPVPGDISQEGLNLNDPVLREEICNQTHCIINFAATTKFDERYDVALGINTSGVRHVMNFAKNCIKLKVFVQVSTAYVCGEKEGLIMEDPCQLGVSLNGVPGPDIDLEMKVVEEKLTQLQREGATEDDIKMAMKDLGMKRATLYGWPNTYVFTKAMGEMLVESLRENMSAVIVRPTMITSTFREPFPGWVEGVRTIDSLIVAYGKGKLTCFVADMKAIFDVIPADMVVNAIITTMVAHANQPCDDIIYHVSSSVENPVRYHKLTDFGFRYFKAKPWLSKDGNPINVGKVTVLDSMASFKIYMFICYLLPLKVLELVNAVFCQYFQRVCLETRRKIQIVMRFVDLYRPYLFFNGLFDNMNTQKLQIAARQGGEEMEYLFNFDPKVIDWDDYFMNIHIPGIVKYSSK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00338 492 Pfam Male sterility protein 18 318 IPR013120 -
Lapu11g00338 492 Gene3D - 8 368 - -
Lapu11g00338 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 353 IPR036291 -
Lapu11g00338 492 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 490 IPR026055 GO:0080019
Lapu11g00338 492 Pfam Male sterility protein 393 490 IPR033640 -
Lapu11g00338 492 CDD FAR_C 391 489 IPR033640 -
Lapu11g00338 492 CDD FAR-N_SDR_e 13 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00338 Lapu-Chr11 6410031 6413821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00338 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 57.368 2.82e-163 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00338 K13356 - gmx:100788994 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00546 5 4927981 4930923 Lapu11g00338 11 6410031 6413821 PCT