Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00516 ATGGCTTCGGCGCGATTGGATCTAGACGGGAACCCCATAAACCCAATCACCATTTGCATGATAGGTGCCGGTGGCTTCATCGGGTCCCACCTCTGCGAGAAGCTCATGTCTGAAACCCCTCACAAAGTTCTTGCCTTGGATGTTTACAACGACAAGATCAAACACCTTCTGGAACCCGACACGCTCCCTTGGGCTGGTCGCATCCAATTCCACCGCCTCAACATCAAGCACGATTCTCGACTTGAAGGCCTCATCAAGATCGCAGATCTGACCATTAATCTGGCTGCTATATGCACTCCCGCGGATTACAACACGCGCCCTCTCGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCGGAAAACAACAAGCGTCTCATTCACTTCTCTACGTGTGAAGTGTATGGGAAAACCATTGGAAGCTTCCTACCCAAAGATAGTGCACTTCGTCAGGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGCATTTTTGGTTCGATTGAAAAGCAGAGATGGTCATATGCCTGTGCTAAGCAGTTGATTGAGAGACTGATTTATGCTGAGGGCGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATACCCGGCATTGATGGTCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGTGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTCGTGTATATTAAGGATGCTATTGAAGCTGTCTTGTTGATGATTGAAAATCCTGCCAGGGCCAATGGACATATTTTTAATGTGGGTAACCCAAAAAATGAGGTTACAGTTAGGCAGCTTGCAGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGGGAAGCACCTCAGGAAAATCCTACTATTGATGTGAGCTCCAAAGAATTTTATGGCGAGGGGTATGATGATAGTGACAAGAGAATTCCAGACATGACCATAATTAATAGGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCAACTCTCACCTATCAGCACAGAACTTATGCTGAAGCCATCAAGAAAGTCATTGCAAAGCCAGTGGCAAGTTAA 1164 0.4665 MASARLDLDGNPINPITICMIGAGGFIGSHLCEKLMSETPHKVLALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPKNEVTVRQLAEMMTQVYSKVSGEAPQENPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00516 387 Gene3D - 16 378 - -
Lapu5g00516 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Lapu5g00516 387 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 16 379 - -
Lapu5g00516 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Lapu5g00516 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 372 - -
Lapu5g00516 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00516 Lapu-Chr5 4666207 4669063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00516 14 382 Miscellaneous Gene Families AT1G02000 21.500 2.15e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00516 K12449 - gmx:100792879 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00516 5 4666207 4669063 Lapu5g00516 5 4666207 4669063 ECH
Lapu5g00516 5 4666207 4669063 Lapu11g00378 11 6880750 6883117 PCT