Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00511 ATGCGAATGGCGGCGGCGGCGGCTTTTACAATCACCGTCGCGTTGTTGGTGGTGGCGGCGGCGGTTGCTGCCGGATCGCCGGCGAGTCTGACGCTGGAAAGAGCGTTTCCGACGAATCACGGAGTGGAGTTGAGTCAGCTGAGAGCTCGCGACGCGCTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTGGTTGATTTCTCCGTCCAAGGCACCTACGATCCCTTCCAAGTCGGGCTCTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAATTTAATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAAACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCCGGGAGTTCATCAACATCTTCACTGATCGCTTGTTCTGACCAAAGGTGCAATAGTGGGATACAGTCATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCATACACTTTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGATCTGTGACCACCAATTCTACAGCGCCTGTAGTTTTTGGTTGTAGCAACCAGCAGACTGGGGACTTGACCAAGTCTGATAGAGCAGTGGATGGCATATTTGGATTTGGGCAACAGGAAATGTCTGTCATATCCCAGCTATCCTCGCAAGGGATAGCTCCAAGAGTATTTTCCCATTGTCTGAAAGGAGATAGCAGTGGAGGGGGTATATTGGTTCTTGGCGAGATTGTGGAGCCAAACATAGTTTACACCTCACTTGTTCCAGCACAGCCTCATTACAATTTAAATCTACAGAGCATCTCTGTCAATGGCCAGACGTTGCAAATTGATTCATCAGTTTTTGCAACATCGAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTACCTTGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTACAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACCTACTCACCACTAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCCGGTGGGGCATCTATGCTTTTAAGACCACAGGACTACCTGATACAGCAGAATTCTATTGGTGGTGCAGCTGTGTGGTGTATTGGTTTTCAGAAAATCCAGGGTCAAGGGGTAACAATTCTAGGAGATCTAGTACTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGCCAACGCATTGGATGGGCTAACTTTGACTGTTCTTTGTCAGTGAATGTCTCTGCAACAACTGGCACTGGCAGAAGTGAATATGTGAATGCTGGAGAGGTAGGTGGAAGCATTTCTTTACGCGATGGACTTAAGTTGACAAAGACAGGGTTCTTGGCTTTCCTTGTGCATCTAACACTAATTTACTGCTTTGGATTCTTATAG 1494 0.4665 MRMAAAAAFTITVALLVVAAAVAAGSPASLTLERAFPTNHGVELSQLRARDALRHRRMLQSSNGVVDFSVQGTYDPFQVGLYFTKVQLGTPPVEFNVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSLIACSDQRCNSGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCYLLTTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKIQGQGVTILGDLVLKDKIVVYDLAGQRIGWANFDCSLSVNVSATTGTGRSEYVNAGEVGGSISLRDGLKLTKTGFLAFLVHLTLIYCFGFL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00511 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Lapu5g00511 497 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Lapu5g00511 497 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Lapu5g00511 497 FunFam Aspartic proteinase-like protein 2 65 268 - -
Lapu5g00511 497 FunFam Aspartic proteinase-like protein 2 269 448 - -
Lapu5g00511 497 Gene3D Acid Proteases 269 448 IPR021109 -
Lapu5g00511 497 ProSiteProfiles Peptidase family A1 domain profile. 82 437 IPR033121 -
Lapu5g00511 497 PANTHER ASPARTYL PROTEASES 17 435 IPR001461 GO:0004190|GO:0006508
Lapu5g00511 497 Gene3D Acid Proteases 58 268 IPR021109 -
Lapu5g00511 497 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
Lapu5g00511 497 SUPERFAMILY Acid proteases 77 444 IPR021109 -
Lapu5g00511 497 CDD pepsin_A_like_plant 82 441 IPR034161 -
Lapu5g00511 497 Pfam Xylanase inhibitor C-terminal 285 437 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00511 Lapu-Chr5 4611962 4617040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00511 56 442 Miscellaneous Gene Families AT1G44130 26.866 1.28e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00511 - - gmx:100791299 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00511 5 4611962 4617040 Lapu5g00511 5 4611962 4617040 ECH
Lapu5g00511 5 4611962 4617040 Lapu11g00384 11 6935409 6942286 PCT