Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00384 ATGGAACCGGTGGCTGCCATTTTTCTATTCGCCGCCGCGCTTCTGTCGGTGGTGGACGGGTCACTGGTGACTCTGACTCTGGAAAGAGCGTTTCCTTCGAATCACGGCGTGGAGTTGAGTCAGCTCAGAGTGTGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTATGTTGTAGATTTTCCTGTCAAAGGCATCTTTGATCCCTCACAAGTCGGGCTTTATTATACCAAGGTAAAAATGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGGAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAATGGTTGTCCTCAGACAAGTGGGCTGCAAATTCAGCTCAATTACTTTGACCCTAGGAGTTCATCAACATCTTCATTGATCTCTTGTTCAGACCGGAGGTGCAGGAATGGAGTACAGTCCTCCGACGCAAGCTGTTCCGGTCAGAACAACCAGTGCACATACACGTTCCAGTATGGTGATGGCAGTGGGACATCAGGCTATTATGTGTCAGACTTGATGCATTTTGCTAGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTATTTGGTTGTAGCATCCAGCAGACTGGGGACTTAACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCCGTCATTTCCCAGCTCTCATCGCAAGGAATTGCACCAAGAGTGTTCTCTCATTGTTTAAAAGGAGATAATACTGGCGGGGGTGTCTTGGTTCTTGGTGAAATCGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCGCAGTATGTTTATTTGTTAGAGCCTCATTACAATTTGTATCTGCAGAGCATCTCTGTCAATGGCCAATTTTTGCCAATTGACCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCCTACCTTGCAGAAGAGGCTTATGCAACCTTTGTGAATGCGATTACAGCTGCTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTTCCGCAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGAATACCTTATGCAACAGAACTATATTGGTGAGGGTTCAGTTTGGTGTATTGGCTTTCAGAAAATCCCGGGTCAAAGTGTAACTATTCTAGGAGATCTCGTATTAAAAGACAAAATTTTTGTGTACGATCTCGCTGGTCAACGAATTGGATGGGCTAACTATGATTGTTCACTGCCTGTGAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTAGATGCAGGAGAGCTAGGTGGAAGCTCTTCTTTATGTGATGGACCTAACACTTTGATAAGGACATTGTTCATTGCTCTGTTCATGTATATAACACTAATTTTGTAG 1488 0.4435 MEPVAAIFLFAAALLSVVDGSLVTLTLERAFPSNHGVELSQLRVWDSLRHRRMLQSTNYVVDFPVKGIFDPSQVGLYYTKVKMGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRNGVQSSDASCSGQNNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGTLTTNSSASVVFGCSIQQTGDLTKSDRAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNTGGGVLVLGEIVEPNIVYTPLVPSQYVYLLEPHYNLYLQSISVNGQFLPIDPAVFATSNNRGTIVDSGTTLAYLAEEAYATFVNAITAAIPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQEYLMQQNYIGEGSVWCIGFQKIPGQSVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASAGRGRSEFVDAGELGGSSSLCDGPNTLIRTLFIALFMYITLIL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00384 495 Gene3D Acid Proteases 264 448 IPR021109 -
Lapu11g00384 495 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Lapu11g00384 495 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Lapu11g00384 495 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Lapu11g00384 495 PANTHER ASPARTYL PROTEASES 17 437 IPR001461 GO:0004190|GO:0006508
Lapu11g00384 495 Gene3D Acid Proteases 52 263 IPR021109 -
Lapu11g00384 495 FunFam Aspartic proteinase-like protein 2 60 263 - -
Lapu11g00384 495 Pfam Xylanase inhibitor C-terminal 286 439 IPR032799 -
Lapu11g00384 495 FunFam Aspartic proteinase-like protein 2 264 450 - -
Lapu11g00384 495 ProSiteProfiles Peptidase family A1 domain profile. 77 439 IPR033121 -
Lapu11g00384 495 CDD pepsin_A_like_plant 77 443 IPR034161 -
Lapu11g00384 495 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Lapu11g00384 495 SUPERFAMILY Acid proteases 73 445 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00384 Lapu-Chr11 6935409 6942286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00384 51 444 Miscellaneous Gene Families AT1G44130 26.277 1.02e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00384 - - gmx:100789004 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00511 5 4611962 4617040 Lapu11g00384 11 6935409 6942286 PCT