Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00495 ATGGTTCCTCTCTTTTCTCTTCTTTTATTCTCAATCGTGATTCGTTATAGTACTGCTCAGGGTCCACCTTCCCCTGGCTACTACCCTAGTTCCAAAATTAGTCCTGTTACCTTTGATGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTCGACCAAGAGTCATTAACAATCTGGCTTGACACTTCCACAGGGAGTGGATTCAAGTCACTTCACTCTTACCGATCTGGATACTTCGGTGCTGCGGTTAAACTTCAACCTGGTTATACCGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCGGGAAACCATGATGAAATAGACATTGAATTCCTTGGTACCACGTCAGATAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGAAATATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACAGAAGATTTTCACAACTATGCTATTCTATGGGAACCCAGTGAGATCATATTTTTAGTGGATGATGTCCCAATAAGAAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGCATGTGTACGGATCAATTTGGGATGCATCTTCATGGGCTACTGAGGGTGGAAAATACAAAGCTGATTATACATACCAACCCTTCATTGGTCAATACAAAAACTTCAAACTTGAAGGTTGCACCACAGAAGCCTCCACCTCATGCCAGCCACCATCAGCCTCACCATCAGGTTATGGAAGCCTGAGCCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACCAGTTGGTTTATGACTATTGCCATGATCCTAGGAGAGACCATACCCTAACTCCAGAATGCTAA 879 0.4369 MVPLFSLLLFSIVIRYSTAQGPPSPGYYPSSKISPVTFDEGFRNLWGPQHQKLDQESLTIWLDTSTGSGFKSLHSYRSGYFGAAVKLQPGYTAGVITSLYLSNNQDYPGNHDEIDIEFLGTTSDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMHVYGSIWDASSWATEGGKYKADYTYQPFIGQYKNFKLEGCTTEASTSCQPPSASPSGYGSLSPQQLAAMQWVQNNQLVYDYCHDPRRDHTLTPEC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00495 292 FunFam Xyloglucan endotransglucosylase/hydrolase 25 292 - -
Lapu5g00495 292 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 229 IPR000757 GO:0004553|GO:0005975
Lapu5g00495 292 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 292 IPR013320 -
Lapu5g00495 292 PIRSF EndGlu_transf 5 292 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lapu5g00495 292 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
Lapu5g00495 292 Gene3D - 18 292 - -
Lapu5g00495 292 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 292 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Lapu5g00495 292 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 37 292 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00495 Lapu-Chr5 4428919 4431319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00495 2 292 Glycoside Hydrolase AT3G44990 65.979 5.42e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00495 K08235 - gmx:100786503 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00495 5 4428919 4431319 Lapu5g00495 5 4428919 4431319 ECH
Lapu5g00495 5 4428919 4431319 Lapu11g00413 11 7271826 7273874 PCT