Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00466 ATGTACAAAAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTCCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCCAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTACTGCTCCACTCTCCGTCAGGCTGAACACTCCGCCGCCGAAGTCGCTCTCAATTCCCTCTCCCACCGTGGCCCCTCCCACTCCCTCGCCGCCAAGATCCTCGATGAGACTGGAGTGTACAAGAACCTTCTACAGGAAATTGCGCAAAGGGTAGGAGCCCCATTGCCTCATTACACAACGTACAGGTCTGGCCTAGGACATTTACCTGTTTTTACCGGGATAGTAGAGCTTGCTGGAATCTCATTTACTGGAGAACCTGCAAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCTTGGTCGGCTTTGAAACAATTGGCAAAAGAGAGTGCAAGCTCCTCAACGGAACCAGAGAACAATGATGAACTGGAACAGATCACGATAGCGCGGGCTTTACTGAATTACCGTTTGAAGGAAAAGATGACAATGTCTAATCCAAACACTCCCATTCCATTTCATAAAAGGTTTCAGATTCAAAATCCCAGACCAATCAGTTCTCAGCCACCGCCAGCCACTTCATCAAAAATCCTTCCCCTAATTTGCCAAAGGACAGCACCTCGAAGTAAGTCTTCAATGGCAACAGCAAATGAAAGTCCTCGAAGCAGGCATCCACAGGCTGCAGTAACCAGTGACAATTCCACCCTACCACCACAGTCTTGTGCTCTAGAAAGCCGAGGGGTCCGACCCCTTAAGTTCCCTGCAGTAGGAGCAGCACCTTATGTTCCTATTCGACAAATGAGATCATCTTGCCAGGGGATTGCTCCTGCAGTGACTATAAGGACTGTAGTACCAGCATTTGCTGCACCACCTTGTCCAACACCTGCATCAGTGCCATCCCATCCTGTAATACGGGCTTCTCCAGTTCGAGTTGCTCCTGCAGTCAATATTCGGCAAGCTATTCCTGTATATGCTGCTCCACCTCCAAGAAGGGATAAACCTGCTCCCACCCAAAAGGATCTACCAACTGCTAGTGCCTCTTGCCAGCTAGATAAAGAGCCAATTAAAATTCAAGAGATGGACAAGGCTGACAACATCCCACCAGAATCGGACACCATACGTATTTTGGAGCAGCTGAAAATTTGA 1233 0.4947 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGISFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASSSTEPENNDELEQITIARALLNYRLKEKMTMSNPNTPIPFHKRFQIQNPRPISSQPPPATSSKILPLICQRTAPRSKSSMATANESPRSRHPQAAVTSDNSTLPPQSCALESRGVRPLKFPAVGAAPYVPIRQMRSSCQGIAPAVTIRTVVPAFAAPPCPTPASVPSHPVIRASPVRVAPAVNIRQAIPVYAAPPPRRDKPAPTQKDLPTASASCQLDKEPIKIQEMDKADNIPPESDTIRILEQLKI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00466 410 Gene3D - 84 155 - -
Lapu5g00466 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lapu5g00466 410 Gene3D - 2 83 - -
Lapu5g00466 410 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Lapu5g00466 410 MobiDBLite consensus disorder prediction 235 267 - -
Lapu5g00466 410 SUPERFAMILY dsRNA-binding domain-like 88 157 - -
Lapu5g00466 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lapu5g00466 410 SMART DRBM_3 2 69 IPR014720 -
Lapu5g00466 410 SMART DRBM_3 88 154 IPR014720 -
Lapu5g00466 410 MobiDBLite consensus disorder prediction 354 376 - -
Lapu5g00466 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lapu5g00466 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lapu5g00466 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lapu5g00466 410 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Lapu5g00466 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lapu5g00466 410 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Lapu5g00466 410 PANTHER - 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00466 Lapu-Chr5 4011570 4014441 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00466 - - gmx:100815739 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00466 5 4011570 4014441 Lapu5g00466 5 4011570 4014441 ECH
Lapu5g00466 5 4011570 4014441 Lapu11g00450 11 7836559 7840613 PCT