Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00420 ATGTCGAGCTTACTTAATTCTTCTCTGAACGGGTCGGCTTCAAATCTTCCAGATGGTGCTGCTGGGCGTTCCTTTGCGACGTCATTTTCTGGTTCTATTCAGGGATTGCACAACATTCATGGGAGCTTTAATGTACCCAATATGCCTAGTTCACTTACATCAAGAAACTCTACGTTAAATAGTGTTCCAACTGGTGGAGGAGTTCAACAACCTTCAGCAAGCCTTTCAAGCGGAAGATTTGCGTCAAATAATCTACCCGTTGCTCTGTCACAGCTATCTCATGGAAGCGTCCATGGACATTCAGGAGTCAACAGTAGAGGAGGATTGGGAATATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGCAGGGAACATTGGGAGGATAAGCTCCGGAGGATTGTCTGTTCCTGGTCTTGCTTCTCGTATAAATTTAGGTGGCAACGCTGGATCTGGTGGTTTAGGCGTGCAAGGACAGAATCGATTGATGAGTGGTGTTCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCGCTTTCACAAAGCCATACTGTAAATAACTTGAACTCTATGGGGATGCTGAATGATGTGAATTCTGGTGACAGTTCACCTTTTGATATCAATGACTTCCCTCAACTGACCAATCATCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGTATTCAAAATGAAGACTTCCCAGCTTTACCAGGATTCAAAGGTGGTAATGCCGATTTCGCAATGGATATGTACCAGAAAGAACAACTTCATGAAAATACTGTGTCAATGATGCAATCTCAGCATTTCTCAATGGGGAGATCTGCTGGTTTCAGTTTGGGGGGATCATACCCTTCACATCGTACACAGCAGCAACAGCAGCAACAGCAGCATACCCCTTCAGTCAGTAGTAATGGTGTCTCCTTTTCATCTGTAAACAATCAAGATCTTCTCCATTTGCATGGAACAGATATGTTTCCATCTTCACACTCAACTTATCACTCCCAGACCAGTGGACCTCCTGGCATTGGACTAAGGCCTTTAAATTCTCCAAATACCGGTATGGGTTCATATGACCAGCTTATTCAGCAGTATCAACAGCAGCAGAACCAGTCCCAGTTCCGCCTTCAGCAAATGTCAGCTGCAAATCAGTCTTTTAGGGATCAGGGCATGAAGTCTATGCAAACTGCCCAATCTAGTCCAGATCCATTTGGTGCACTTGGCTTATCCAGTGTAGTGCATATAAGTGATCCCGACCTGAAATATCTGGCTCATGGGATTGATCTTACAACGCTTGGGTTGAATTTGAATTCGTCAGAAAATCTTTACAAGACTTTTCGATCTCCATGGTCTGATGAACCAGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGCCGCCTGCCCTACATCAAGGTTATTTTTTGAAGTTTTCGGTGGAAACGTTGTTTTACATATTTTACAGCATGCCCAAGGATGAAGCACAACTATATGCAGCAAATGAACTTTACAAACGAGGTTGGTTTTACCATAAAGAGCACCGTTTTTGGTTTATAAGAGTTGCCAACATGGAGCCGCTTGTCAAAACAAATACGTACGAGAGAGGATCTTACCACTGTTTTGATCCAAATACCTTTGAGACAGTCCGGAAGGATAATTTTGTTCTTCATTATGAATTGGTGGAAAAGAGACCGTCTTTGCCTCAACGATGA 1845 0.4363 MSSLLNSSLNGSASNLPDGAAGRSFATSFSGSIQGLHNIHGSFNVPNMPSSLTSRNSTLNSVPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSVHGHSGVNSRGGLGISPILGNAGPRITSSMGNMVGAGNIGRISSGGLSVPGLASRINLGGNAGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHTVNNLNSMGMLNDVNSGDSSPFDINDFPQLTNHPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADFAMDMYQKEQLHENTVSMMQSQHFSMGRSAGFSLGGSYPSHRTQQQQQQQQHTPSVSSNGVSFSSVNNQDLLHLHGTDMFPSSHSTYHSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAANQSFRDQGMKSMQTAQSSPDPFGALGLSSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLPQR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00420 614 MobiDBLite consensus disorder prediction 313 396 - -
Lapu5g00420 614 MobiDBLite consensus disorder prediction 321 357 - -
Lapu5g00420 614 Pfam NOT2 / NOT3 / NOT5 family 483 603 IPR007282 GO:0006355
Lapu5g00420 614 MobiDBLite consensus disorder prediction 195 245 - -
Lapu5g00420 614 PANTHER CCR4 NOT-RELATED 33 608 IPR040168 GO:0030015
Lapu5g00420 614 MobiDBLite consensus disorder prediction 195 250 - -
Lapu5g00420 614 MobiDBLite consensus disorder prediction 364 382 - -
Lapu5g00420 614 FunFam probable NOT transcription complex subunit VIP2 isoform X1 433 614 - -
Lapu5g00420 614 MobiDBLite consensus disorder prediction 47 76 - -
Lapu5g00420 614 Gene3D - 432 614 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00420 Lapu-Chr5 3483186 3492925 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00420 K12605 - gmx:100776413 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00420 5 3483186 3492925 Lapu11g00527 11 8664999 8677143 PCT