Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00527 ATGTCGGGGTTACTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCTGGACGATCTTTTGCTACATCGTTTTCTGGTCAATCTGGTGCAGCCTCCCCAATTTTTCATCACACTGGAGCTATTCAAGGATTACACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCTGGTTCACTCACGTCGAGAAATTCGACTATAAATAATGTACCATCAGGTGGTGTTCAACAACCCACTGGAAGCCTTTCTAGTGGAAGATTTACATCCAACAATCTACCGGTTGCATTGTCTCAGCTATCTCATGGAAGCTCACATGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCTACATCTGGTGCAATTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCTGTGGGAAACATGGTTGGTGGAGGGAATATCGGAAGGACTGGTGGAGGATTGTCCGTGCCTGCTCTTGCCTCTCGTCTAAATTTGGGTGCAAACAGTGGATCAAGTGGTTTAGGTATGCAAGGACAGAATCGATTAATGAGTGGTGTACTTCCACAAGGATCTCCACAGGTAATTTCAATGCTTGGAAATTCGTATCCCAGTGCTGGAGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTGAGTAACTTAAACTCTATGGGAATGTTGAATGATGTGAATACCAATGACAGTTCACCTTTTGACCTCAACGACTTCCCTCAACTGACAAGTCGTCCTAGTTCAGCTGGAGGGCCTCAGGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGTGTCAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAGAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGCGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTACCAATGATGCAATCTCAGCATTTCTCTATGGGAAGGTCGGCTGGTTTCAGCTTAGGGGGTGCATATTCGTCACATCGAGCACAACAGCAACATGTTCCTTCAGTCAGTAGTGGCAATGTCTCTTTTTCATCTGTTAACAACCAGGATCTTCTCCATTTGCATGGATCAGATATTTTTCCATCTTCACATTCAACCTATCATTCACAGACCAGTGGACCTCCTGGTATTGGATTAAGGCCTTTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATACGAGCAGCTTATCCAGCAATATCAACAGCATCAAAACCAGTCGCAGTTCCGCCTGCAAATGTCAGCTGTAAATCAATCTTTTAGGGATCAGGGCATGAAGTCTATTCAAACCACTCAACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTGGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACCTTTGGTTCTCCATGGTCCGATGAACCAGCTAAGGGCGATCCGGAGTTTAATGTGCCACAATGTTATTATGCTAAACAGCCGCCTGCTCTACATCAAGGTTACTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCACAACTGTATGCCTCCAATGAACTTTACAACAGAGGTTGGTTTTATCATAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACAAACACATACGAGAGGGGATCTTATCACTGTTTCGAACCAAGCATATTTGAAACCGTCCGCAAGGATAATTTTGTTCTTCATTATGAAATGTTGGAAAAGAGACCCCATCTGCCTCAACATTGA 1977 0.4299 MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGAIQGLHNIHGSFNVPNMPGSLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSGAIGNRNAVPGLGVSPILGNAGPRITSSVGNMVGGGNIGRTGGGLSVPALASRLNLGANSGSSGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQAVSNLNSMGMLNDVNTNDSSPFDLNDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFSMGRSAGFSLGGAYSSHRAQQQHVPSVSSGNVSFSSVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYEQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTTQPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYASNELYNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRPHLPQH* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00527 658 MobiDBLite consensus disorder prediction 59 90 - -
Lapu11g00527 658 Gene3D - 477 658 IPR038635 -
Lapu11g00527 658 Pfam NOT2 / NOT3 / NOT5 family 527 649 IPR007282 GO:0006355
Lapu11g00527 658 PANTHER CCR4 NOT-RELATED 48 652 IPR040168 GO:0030015
Lapu11g00527 658 FunFam probable NOT transcription complex subunit VIP2 isoform X1 476 658 - -
Lapu11g00527 658 MobiDBLite consensus disorder prediction 413 440 - -
Lapu11g00527 658 MobiDBLite consensus disorder prediction 265 300 - -
Lapu11g00527 658 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00527 Lapu-Chr11 8664999 8677143 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00527 K12605 - gmx:100807026 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00527 11 8664999 8677143 Lapu11g00527 11 8664999 8677143 ECH
Lapu5g00420 5 3483186 3492925 Lapu11g00527 11 8664999 8677143 PCT