Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00419 ATGGAGTTCCTCACATTACTTTATGGTGCTACAGCATTGTACTTGTGTTTCCTGATCTGGAAATTGTTTGATCAGAGAAGGGACCAAGAGTGTTACATATTGGACTACCAACTGTATAAGCCAAGCGATGAAAGAAAGCTTGGAACTGAAAGCTGTGGCAGGATCATAGACAGGAACAAGAGTTTGGGTCTGAATGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCTGGCATTGGTGAGGAAACTTATGCCCCAAGCAACATCATCGAGGGTCGTGAGGCAACTCCGACACTGAACGATGGTGTCACAGAAATGGAGGAGTTTTTTCATGATAGCATTGCCAAGCTCCTTGCAAGGTCAGGCATTTCCCCCTCACAGATCGATGTGCTTGTGGTAAATGTCTCAATGTTCTCCGTTGCTCCTTCCTTGACTTCGAGAATCATTAACCACTACAAAATGAAGGAGGACATAAAGGCTTACAACCTCGCTGGGATGGGTTGCAGTGCTAGTCTCATTTCATTGGACATCATCAGGAACGTTTTCAAGTCACAAAAGAACAAGTTTGCTCTTTTGGTGACTTCTGAGTCTCTCAGTCCAAACTGGTATGATGGCAACGACAAATCAATGATTCTTGCCAACTGTTTGTTCCGGAGTGGTGGGTGTGTCATACTTTTGACAAACAAAAGATCCTTGAAGCACAGGGCCATGTTGAGGTTGAAGTGTTTGGTGAGGACTCATCATGGGGCTAGAGAAGATGCCTATAGTTGCTGCAATCAGAAGGAAGATGAGGAAGGCAGGCTTGGGTTTTACCTTGCCAAAAACCTTCCCAATGCAGCTACAAGAGCCTTTGTTGATAATTTAAGGGTGTTGTCACCCAAGGTTTTGCCAACTAGGGAGTTGCTAAGGTTTCTGGTTGTGTTCCTCGTTAAAAAACTGAGGGAAACTAGTTCCCTTAAGTCTTCGAGTGGTGGATCTAATAAATCTATCAAATCCCCTTTGAACTTCAAGACTGGGATTGAACATTTTTGCCTCCACACAGGAGGAAGGGCTGTGATTGATGGCATTGGAATGAGCTTAGATCTGTGTGAATACGACCTTGAGCCAGCAAGGATGACACTGCACCGGTTTGGGAACACTTCAGCTAGTAGCCTGTGGTACGTGCTGGGGTACATGGAGGCCAAAAAGAGGCTCATGAAGGGTGACAGGGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAGGTAATGAAGGATCTGAGGGATCATCCTAATGTGTGGGACGAATGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAGTTTGGTTGGATCAATGATGTTCAAGATGCAAGCAACTTCAAACTTCCTGATTTTCTCAAGTAA 1419 0.4496 MEFLTLLYGATALYLCFLIWKLFDQRRDQECYILDYQLYKPSDERKLGTESCGRIIDRNKSLGLNEYKFLLKAVVNSGIGEETYAPSNIIEGREATPTLNDGVTEMEEFFHDSIAKLLARSGISPSQIDVLVVNVSMFSVAPSLTSRIINHYKMKEDIKAYNLAGMGCSASLISLDIIRNVFKSQKNKFALLVTSESLSPNWYDGNDKSMILANCLFRSGGCVILLTNKRSLKHRAMLRLKCLVRTHHGAREDAYSCCNQKEDEEGRLGFYLAKNLPNAATRAFVDNLRVLSPKVLPTRELLRFLVVFLVKKLRETSSLKSSSGGSNKSIKSPLNFKTGIEHFCLHTGGRAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLMKGDRVLMISFGAGFKCNSCLWEVMKDLRDHPNVWDECIDDYPPESLANPFMEKFGWINDVQDASNFKLPDFLK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00419 472 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lapu5g00419 472 CDD CHS_like 12 420 - -
Lapu5g00419 472 PANTHER 3-KETOACYL-COA SYNTHASE 14 442 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lapu5g00419 472 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Lapu5g00419 472 Gene3D - 64 422 IPR016039 GO:0016746
Lapu5g00419 472 SUPERFAMILY Thiolase-like 243 423 IPR016039 GO:0016746
Lapu5g00419 472 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 340 421 IPR013747 -
Lapu5g00419 472 Pfam FAE1/Type III polyketide synthase-like protein 25 313 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00419 Lapu-Chr5 3469859 3471953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00419 19 469 Acyl Lipid Metabolism Gene Families AT2G28630 67.325 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00419 K15397 - gmx:100776947 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00419 5 3469859 3471953 Lapu5g00419 5 3469859 3471953 ECH
Lapu5g00419 5 3469859 3471953 Lapu11g00531 11 8712937 8714829 PCT