Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00414 ATGGAGATTGATCTTTCTCCCAGGTTGGCGAAGAAAGTTTCTGCAGGCAATGGTGGGTCCTACCACGCCTGGTCCCCCTCTGAGCTTCCCATGCTTCGCGAAGGCAACATTGGTGCTGCCAAACTCTCTCTGCACAAAAACGGTTTCGCCCAACCTCGTTATTCCGACTCTTCCAAAGTCGCTTATGTTCTTCAAGGAAGTGGAGTGGCTGGGATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGGGATGCCCTGGCACTCCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGAAACCGACTTGGTTGTTCTGTTCCTTGGGGACACTTCCAAGGCTCACAGGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACGGGGTTTTCCACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAATACCCTTGTTGGAAAACAATCGGGCAAAGGGATCGTGCAGTTGGAAGGAAACATCACACTTCCCGTGCCTAAACCGGAGCACCGGAATGGCATGGCGTTGAACTGCGAAGAGGCTCCACTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTAAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGATTAGGGGCTGACCTTGTGAGGTTGGATGGAGGAGCCATGTGCTCTCCAGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGAGTTGATGGTCGTAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAGATTGCTGATCCAGAGGGAATGGAGTGGTTCTCTATCATCACCACCCCTAAAAACAACCATCCATTTGATATTCTGTATGTTGCTTGA 954 0.4906 MEIDLSPRLAKKVSAGNGGSYHAWSPSELPMLREGNIGAAKLSLHKNGFAQPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETDLVVLFLGDTSKAHRAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEESDVNTLVGKQSGKGIVQLEGNITLPVPKPEHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTIKAGNLFIVPRFFVVSKIADPEGMEWFSIITTPKNNHPFDILYVA* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00414 317 SMART Cupin_1_3 3 157 IPR006045 -
Lapu5g00414 317 SMART Cupin_1_3 195 317 IPR006045 -
Lapu5g00414 317 Pfam Cupin 199 309 IPR006045 -
Lapu5g00414 317 Pfam Cupin 11 156 IPR006045 -
Lapu5g00414 317 CDD cupin_11S_legumin_C 198 306 - -
Lapu5g00414 317 CDD cupin_11S_legumin_N 4 173 - -
Lapu5g00414 317 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Lapu5g00414 317 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Lapu5g00414 317 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Lapu5g00414 317 PANTHER OS03G0336100 PROTEIN-RELATED 10 311 - -
Lapu5g00414 317 SUPERFAMILY RmlC-like cupins 17 305 IPR011051 -
Lapu5g00414 317 Gene3D Jelly Rolls 196 311 IPR014710 -
Lapu5g00414 317 Gene3D Jelly Rolls 4 195 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00414 Lapu-Chr5 3420753 3423317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00414 35 310 Miscellaneous Gene Families AT2G18540 20.743 3.96e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00414 - - vra:106758740 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00414 5 3420753 3423317 Lapu5g00414 5 3420753 3423317 ECH
Lapu5g00414 5 3420753 3423317 Lapu11g00541 11 8791684 8794324 PCT