Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00541 ATGGATATTGATCTTTCTCCTCAGTTGGCCAAGAAGGTGTACGAGAGCAAAGGTGGATCTTACTATGCATGGTCCCCTTCTGAGCTTCCCATGTTGCGTGAAGGAAACATTGCTGCTGCCAAACTAGCTCTTCAGAAGAATGGTTTTGCCCTTCCTCATTACTCTGACTCTTCCAAGGTTGCATACGTTCTACAAGGAAGTGGAGTTGCTGGAATTGTGCTCCCTGAATCAGAAGAGAAGGTTGTTGCAATTAAGAAAGGCGATGCTTTGGCACTCCCTTTTGGTGTGGTGACATGGTGGTATAACAAGGAGGATACTGAGTTGGTAGTTCTGTTCCTGGGGGACACTTCAAAAGCACACAAGACTGGTGAATTCACAGATTTTTTTCTGACTGGTGCTAATGGGATCTTCACTGGATTTTCAACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAAAAGGATGTGAAAACCCTTGTTGGGAATCAATCAGGTAAGGGTATTGTGAAGCTTGAAGGAAATATCAACCTTCCAGAGCCTAAAGAGGAACACAGGAAAGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTAGGTGAGGTTGGTCTAGGAGCAGACCTTGTGAGGTTGGATGGAAAAGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCATATCAGGTTACATACATTGTGAGGGGAAGTGGCCGTGCTCAGGTTGTTGGTGTGGATGGTCGAAGGGTTTTGGAGACAACTGTGAAAGCTGGAAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTGTCCAAGATTGCTGACCCTGATGGCCTGGAGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACTCACCTGGCTGGAAGTATTGGGGCATGGAAGGCTCTTTCACCAACGGTTCTGCAGGCTGCTTTCAGTGTAGATGCAGAACTTGAGCAACTCTTCCGTTCAAAGAGGAATGCAGATGCCATTTTCTTCCCTCCACCAAATTGA 1071 0.4631 MDIDLSPQLAKKVYESKGGSYYAWSPSELPMLREGNIAAAKLALQKNGFALPHYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKTGEFTDFFLTGANGIFTGFSTEFVGRAWDLEEKDVKTLVGNQSGKGIVKLEGNINLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSAYQVTYIVRGSGRAQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADPDGLEWFSIITTPNPVFTHLAGSIGAWKALSPTVLQAAFSVDAELEQLFRSKRNADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00541 356 SUPERFAMILY RmlC-like cupins 12 346 IPR011051 -
Lapu11g00541 356 CDD cupin_11S_legumin_N 4 173 - -
Lapu11g00541 356 Gene3D Jelly Rolls 3 194 IPR014710 -
Lapu11g00541 356 CDD cupin_11S_legumin_C 198 353 - -
Lapu11g00541 356 PANTHER OS03G0336100 PROTEIN-RELATED 8 355 - -
Lapu11g00541 356 SMART Cupin_1_3 3 157 IPR006045 -
Lapu11g00541 356 SMART Cupin_1_3 195 339 IPR006045 -
Lapu11g00541 356 Pfam Cupin 199 337 IPR006045 -
Lapu11g00541 356 Pfam Cupin 10 156 IPR006045 -
Lapu11g00541 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Lapu11g00541 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Lapu11g00541 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Lapu11g00541 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Lapu11g00541 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Lapu11g00541 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00541 Lapu-Chr11 8791684 8794324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00541 - - gmx:100782055 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00414 5 3420753 3423317 Lapu11g00541 11 8791684 8794324 PCT