Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00386 ATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTCTGTAAGAACCCCGTTGATGGATTTTCCGCAGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTCACTATAATTGGCCCTCCCGATACTCTCTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCTGAGATATGGCATCCCAATGTTTATCCTGATGGGCGAGTCTGTATATCAATTCTTCATCCTCCTGGTGACGATCCGAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAAAGTATAGTACTAAGCATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGGTTATGTATTTGATATGTGGTGGGGAAATTCTGGCTTATGTCGAGGTACTTGAGCGGATAGCTATTGTGTATGAAGAGTGA 504 0.4444 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAVMYLICGGEILAYVEVLERIAIVYEE* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00386 167 SMART ubc_7 7 167 - -
Lapu5g00386 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lapu5g00386 167 FunFam ubiquitin-conjugating enzyme E2 7 2 147 - -
Lapu5g00386 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 144 - -
Lapu5g00386 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 167 IPR000608 -
Lapu5g00386 167 CDD UBCc 17 145 IPR000608 -
Lapu5g00386 167 Pfam Ubiquitin-conjugating enzyme 9 144 IPR000608 -
Lapu5g00386 167 Gene3D Ubiquitin Conjugating Enzyme 2 147 IPR016135 -
Lapu5g00386 167 SUPERFAMILY UBC-like 3 145 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00386 Lapu-Chr5 3215595 3219898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00386 11 131 Miscellaneous Gene Families AT3G17000 32.308 2.18e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00386 K10575 - gmx:100782328 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00386 5 3215595 3219898 Lapu5g00386 5 3215595 3219898 ECH
Lapu5g00386 5 3215595 3219898 Lapu11g00563 11 8945194 8952306 PCT