Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00563 ATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCTGTCGACGGCTTCTCCGCCGGTTTGGTCGACGAAAGCAACATTTTTGAATGGAGTGTCACCATAATTGGACCGCCAGATACTCTATACGAGGGGGGCTTTTTCAATGCTATTATGAGTTTTCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAATTCACCTCAGAGATATGGCATCCCAATGTATATCCTGATGGCCGGGTTTGTATATCGATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAACGTTGGACGCCTGTTCATACAGTAGAAAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAATGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTGAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4331 MASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00563 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Lapu11g00563 166 CDD UBCc 17 159 IPR000608 -
Lapu11g00563 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 163 - -
Lapu11g00563 166 SMART ubc_7 7 164 - -
Lapu11g00563 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Lapu11g00563 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Lapu11g00563 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Lapu11g00563 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Lapu11g00563 166 FunFam ubiquitin-conjugating enzyme E2 7 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00563 Lapu-Chr11 8945194 8952306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00563 11 131 Miscellaneous Gene Families AT3G17000 32.308 7.17e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00563 K10575 - gmx:100305813 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00386 5 3215595 3219898 Lapu11g00563 11 8945194 8952306 PCT