Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00315 ATGCATAAGCCAGAAGGGCCACCAGAGTTTGCTCTCAAGGAGACCTCACCTAACATTGGGGCAGGTGCAGTCATGAGGGACAAGCTCTCCTGCACCTATGACCTTGTGGAACAGATGCAGTACCTTTATGTTCGAGTGGTGAAAGCCAAGGATTTAGCAGGGAAGGATGTTACTGGTGGTGTAGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTTACCAAGCACTTTGAGAAAAAGTCCAATCCTCAGTGGAATCAGGTTTTTGCCTTTTCCAAAGAAAGGATTCAAGCTTCTGTTCTGGAGGTGGTACTGAAAGACAAGGTTGTTGTTGTGGATGACTTTGTGGGGAGAGTGACGTTTGATCTTAATGAAATCCCAAAACGTGTGCCACCAGATAGCCCTTTGGCTCCACAGTGGTACAGGCTGGAAGATAGGAGAGGTGACAAAGCCAAGGGAGAGTTAATGTTGGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAGGCTGTTGCGACCATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAGGACTTGATACCAAGTGACAAAACCCGGTATCCTGAAGTTTTTGTGAAGGCCAATCTGGGGAATCAGTTTTCAAGAACTAGAGCATCTCAAAGTAAAACCATAAACCCCATGTGGAATGAGGACCTGATGTTTGTTGCTGCTGAGCCTTTTGAGGAGCCCTTGGTTCTGACTGCTGAAGACAGGGTTGGACCAAACAAGGATGAAATCCTGGGAAGGTGTGTCATTCCTTTACACAATGTGCAAAGGAGGTTGGACCATAAGCCTGTGAACACAAGATGGTTTAATCTTGAAAAACATGTGATTGTTGAAGGGGAAAAGAAGAAAGAGACCAAGTTCTCAAGTAGGATACACTTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGCTGGATGAATCAACTCACTACAGTAGTGATCTTAGGCCAACTGCGAAGCAGCTATGGAAGGCAAGCATTGGAATTCTGGAAATGGGGATTATAAGTGCACAAGGGCTGATGCCAATGAAGACAAGAGATGGTAGAGGAACCACAGATGCCTATTGTGTAGCTAAATATGGGCAGAAATGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTAGGGGTTTGTGATAATGGTCATTTACATGGGGGAGAGAAATCAGGTGGATCAAAGGATTCAAGAATAGGGAAGGTGAGAATTAGGCTGTCCACTCTTGAAGCTGATAGGGTGTACACACACTCTTATCCTCTTTTAGTACTGCATAATTCAGGTGTGAAGAAAATGGGAGAAGTGCAATTGGCTGTAAGGTTCACAAGCTTATCTTTGGTAAACATGTTGTGTATGTATTCACAGCCATTGTTGCCAAAGATGCACTACATCCATCCTCTATCTGTGATTCAACTAGACAGTCTTAGGCATCAGGCTATCCAGATTGTGTCAATGAGGTTGAGCCGTGCTGAGCCACCACTGAGGAAAGAAGTGGTGGAATACATGCTAGATGTGGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCCAATTTCTTCAGAATAACCATAGTTCTAGGTGGGTTGATAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAGAACCCCCTTACATCCATACTCATTCATATCCTTTTCATAATACTGGTTCTTTATCCAGAGCTAATACTTCCAACAACTTTCCTCTACCTTTCTCTGATTGGAATTTGGAACTTCAGATGGAGGCCAAGACATCCTCCTCATATGGACACAAGACTATCACATGCTGATGCTGCCCACCCAGATGAACTAGATGAAGAGTTTGATACATTCCCTACTTCTCGATCATCAGATATGGTTAGAATGAGGTATGATCGTTTAAGAAGCATTGCTGGGAAGGTTCAAACTGTTGTAGGGGACTTGGCCACTCAAGGAGAAAGGTTCCACAATCTACTAAGCTGGAGAGACACAAGGGCAACCACACTCTTTGTGGCATTCTGTTTCATTGCTGCACTAGTTCTCTATGTTACTCCTTTCCAAGTTGTGTCCCTTCTCATTGGCTTCTATGTACTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGCCCCATTCAACTACTTCAAGAGATTGCCTGCTAGAGTGGACACAATATTGTAA 2325 0.4434 MHKPEGPPEFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKDLAGKDVTGGVDPYVEVKLGNYKGLTKHFEKKSNPQWNQVFAFSKERIQASVLEVVLKDKVVVVDDFVGRVTFDLNEIPKRVPPDSPLAPQWYRLEDRRGDKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVATIRSKVYLSPKLWYVRVNVIEAQDLIPSDKTRYPEVFVKANLGNQFSRTRASQSKTINPMWNEDLMFVAAEPFEEPLVLTAEDRVGPNKDEILGRCVIPLHNVQRRLDHKPVNTRWFNLEKHVIVEGEKKKETKFSSRIHLRVCLEGGYHVLDESTHYSSDLRPTAKQLWKASIGILEMGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSLAPRWNEQYIWEVFDPCTVITVGVCDNGHLHGGEKSGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSLVNMLCMYSQPLLPKMHYIHPLSVIQLDSLRHQAIQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRITIVLGGLIAFGRWFDQICNWKNPLTSILIHILFIILVLYPELILPTTFLYLSLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDMVRMRYDRLRSIAGKVQTVVGDLATQGERFHNLLSWRDTRATTLFVAFCFIAALVLYVTPFQVVSLLIGFYVLRHPRFRQKHPSAPFNYFKRLPARVDTIL* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00315 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Lapu5g00315 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Lapu5g00315 774 CDD C2B_MCTP_PRT_plant 41 165 IPR047257 -
Lapu5g00315 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 178 IPR035892 -
Lapu5g00315 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 496 IPR035892 -
Lapu5g00315 774 Gene3D C2 domain 31 164 IPR035892 -
Lapu5g00315 774 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 9 774 IPR047259 -
Lapu5g00315 774 FunFam C2 domain-containing protein 36 180 - -
Lapu5g00315 774 CDD C2C_MCTP_PRT_plant 202 352 IPR047258 -
Lapu5g00315 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Lapu5g00315 774 Pfam C2 domain 41 134 IPR000008 -
Lapu5g00315 774 Pfam C2 domain 201 307 IPR000008 -
Lapu5g00315 774 Pfam C2 domain 363 474 IPR000008 -
Lapu5g00315 774 FunFam C2 domain-containing protein 346 498 - -
Lapu5g00315 774 FunFam C2 domain-containing protein 188 333 - -
Lapu5g00315 774 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Lapu5g00315 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Lapu5g00315 774 SMART C2_3c 364 471 IPR000008 -
Lapu5g00315 774 SMART C2_3c 202 300 IPR000008 -
Lapu5g00315 774 SMART C2_3c 41 137 IPR000008 -
Lapu5g00315 774 CDD C2D_MCTP_PRT_plant 364 491 IPR047255 -
Lapu5g00315 774 Gene3D C2 domain 187 333 IPR035892 -
Lapu5g00315 774 Gene3D C2 domain 361 498 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00315 Lapu-Chr5 2610557 2612889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00315 1 774 Lipid Metabolism Gene Families AT3G57880 80.799 0.0 1329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00315 - - gmx:100809753 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00315 5 2610557 2612889 Lapu5g00315 5 2610557 2612889 ECH
Lapu5g00315 5 2610557 2612889 Lapu11g00648 11 9656178 9658867 PCT