Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00305 ATGGCCTACACCCAAGCTTTCTTGCAGCTCCGTGCCCTAACCACTCCTGTTAGAGTTTTGCCACAGTGGGAAGTGGTGGGCACCAAACGCAAGCACATTGTTTGCAAGGCACAGAAGGAGGATGTCGAAGAGACTGATGCCACCAACCTTAGCCTTGTCTCTCGTAGATTGGCCCTAGGTACTGCGCTCATCGGTGGTGCTGCTGCTGCTGGCACTAAGGTCTCACCTGCTGATGCTGCTGTTGCACAGCTCTCTCTGGAGAAAGCTGCAGTTAGCACATTACCAGCAATTAATTCTGCGGAATATCCTGCATCGGTCGTGGAAGCTCTTTCACTTAATCGAAGCAGTTTTCCGACAGATTTCGTTTTCGGGACAGCATCCGCGGCTTACCAGTACGAAGGAGCGGCTTTTGAATATGGAAGAAAACCAAGTATATGGGATAACTTCACCCACAAGTATCCAGAGAGGATAGACGATAGAAGTAATGGAGATGTAGCAGTTGACGAATATCATCGCTACCAGGAAGATGTTCAGATAATGAAGGATATGAATCTGGATGCATACAGATTCTCCGTCTCATGGTCTAGAATCCTACCAAACGGAAAGCCAGGTATAAACGAAGAGGGCGTAAACAAAGAGGGAATCGATTATTACAACAAACTCATCGATGATCTAAAAGCCAAGGGTCTAGAACCATATATCACACTCTTTCACTGGGATACTCCCCAAGCTTTACAAGAAGAGTATGGAGGTTTCTTATCTCGTCACATTGTAGATGATTTTCGAGACTTCGCACAGATTTGTTTCAAATACTTTGGAGACAGGGTGAAACATTGGATTACTCTAAATGAGCCATGGTCTTACAGTAATAATGGTTATGCAGTTGGGTCCTTTGCACCAGGTCGATGCTCTGAATGGCAAGATTCAACATGCCTTGGTGGTGATTCAGGAACAGAACCTTACATTGTTACACATAATCTACTACTTGCTCATGCAGCTGCTGTAGATGTGTACAGGAAAGAGTTCAAGGAAAGTCAAGATGGAGAGATAGGCATAACACTCATTTCTAGTTGGTTTGAGCCATATTCAGATACTGATGCAGATAAAGATGCTGCCAAACGAGCACTTGACTTCATGTTTGGATGGTACATGGAACCCTTGACATCAGGAAGGTATCCAAAGAGCATGCGTACGCTAGTGGGTAAACGATTGCCAGAGTTCACTGAAGAAGAAGCAAAACTGGTTACTGGTTCATTTGATTTTCTTGGATTAAACTATTACACCACTAACTATGCCCAAAATCAACCCAATAGCAGTGGTGTACCTAGTTATGCTACTGATGCCAATGTCATTCAATCAACTCAACGCAATGGTATTCCCATAGGTGCACCGACCGCTTCTGATTGGTTATATGTCTGTCCCAAAGGAATTAGAGACTTGTTGCTCTATACCAAAGCAACCTACAAAAATCCTTTGATTTTCATAACCGAAAATGGTAGGGGTAATGATGTGAACGATGAAACACAGTCTCTTGAAGAAGCTCTTATGGATATCTATAGAATCGATTATTACTATCGCCATCTCTATTATTTGCTTTCGGCAATTAACGATGGCGTAAATGTGAAGGGATATTTTGCATGGTCACTGTTGGATAATTTTGAATGGAAGAATGGTTATTTAGTTGGATTTGGACTAAACTATGTGGACAGAAATGATCATTTGAAGCGATATGCCAAACTCTCTGCACAATGGTTCAAGAATTTCCTTCAAAAACCAGTAGATGTTAAATGA 1791 0.426 MAYTQAFLQLRALTTPVRVLPQWEVVGTKRKHIVCKAQKEDVEETDATNLSLVSRRLALGTALIGGAAAAGTKVSPADAAVAQLSLEKAAVSTLPAINSAEYPASVVEALSLNRSSFPTDFVFGTASAAYQYEGAAFEYGRKPSIWDNFTHKYPERIDDRSNGDVAVDEYHRYQEDVQIMKDMNLDAYRFSVSWSRILPNGKPGINEEGVNKEGIDYYNKLIDDLKAKGLEPYITLFHWDTPQALQEEYGGFLSRHIVDDFRDFAQICFKYFGDRVKHWITLNEPWSYSNNGYAVGSFAPGRCSEWQDSTCLGGDSGTEPYIVTHNLLLAHAAAVDVYRKEFKESQDGEIGITLISSWFEPYSDTDADKDAAKRALDFMFGWYMEPLTSGRYPKSMRTLVGKRLPEFTEEEAKLVTGSFDFLGLNYYTTNYAQNQPNSSGVPSYATDANVIQSTQRNGIPIGAPTASDWLYVCPKGIRDLLLYTKATYKNPLIFITENGRGNDVNDETQSLEEALMDIYRIDYYYRHLYYLLSAINDGVNVKGYFAWSLLDNFEWKNGYLVGFGLNYVDRNDHLKRYAKLSAQWFKNFLQKPVDVK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00305 596 PRINTS Glycosyl hydrolase family 1 signature 493 501 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 PRINTS Glycosyl hydrolase family 1 signature 418 432 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 PRINTS Glycosyl hydrolase family 1 signature 538 555 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 PRINTS Glycosyl hydrolase family 1 signature 562 574 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 PRINTS Glycosyl hydrolase family 1 signature 517 528 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 FunFam Beta-glucosidase 12 103 591 - -
Lapu5g00305 596 Pfam Glycosyl hydrolase family 1 115 591 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 Gene3D Glycosidases 98 591 - -
Lapu5g00305 596 PANTHER GLYCOSYL HYDROLASE 116 591 IPR001360 GO:0004553|GO:0005975
Lapu5g00305 596 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 121 135 IPR033132 -
Lapu5g00305 596 ProSitePatterns Glycosyl hydrolases family 1 active site. 493 501 IPR018120 -
Lapu5g00305 596 SUPERFAMILY (Trans)glycosidases 107 590 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00305 Lapu-Chr5 2526851 2531558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00305 112 591 Glycoside Hydrolase AT5G44640 53.638 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00305 K01188 - vvi:100260409 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00305 5 2526851 2531558 Lapu5g00305 5 2526851 2531558 ECH
Lapu5g00305 5 2526851 2531558 Lapu11g00657 11 9726203 9729242 PCT