Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu11g00657 ATGGCATGCAAGAGCTTTTGCATTCTCAGCCTCATTACTTTTGTTCTTGTTATTAGCAAATCAAATGTTAATTGCACAGAAACTGGTGCAGTTGATCCCATTCTTGATATTGGTTCTCTGAATCGAGACAGTTTCCCTCCTGGTTTCATCTTTGGGGCTGGATCCTCATCATACCAGTTCGAAGGTGCAGCGACTGAAGGTGGTAGAGGACCAAGTGTGTGGGATACTTTCACCCATAAATATCCAGAAAAGATACTGGACAAAAGCAATGGAGATGTTGCTATCGATACATATCACCGTTACAAGGAAGATGTTAAATTTATGAAGGATATGAACTTGGATTCATACAGATTCTCGATTTCTTGGTCCAGAATACTACCAAAAGGAAAGCTGAGTGGAGGTATAAATCAAGAAGGAATCGACTATTACAACAATCTCATCAACGAACTATTGGCTAATGGTATAAAACCATTGGTAACTCTTTTCCATTGGGATCTTCCCCAATCTTTAGAAGATGAATATGGTGGCTTCCTAAGTCCTCTCATAATTAAGGATTTTCGGGATTATGCGGAAGTTTGCTTCAAGGAATTTGGAGATAGAGTTAAGCATTGGGTTACATTGAATGAGCCATGGACTTACAGCATTAATGGCTATGCAAATGGAACAATGGCACCAGGACGTTGTTCTAGTTGGGTAAATCCAAATTGCACTGGAGGGGATTCTAGTACAGAGCCCTATTTAGCTTCACACTACCAACTACTGGCTCATGCAGCAGCTGTTCGTGTATACAGGACCAAGTTTCAGGTATCACAAAAAGGTTTGATAGGCATTACCTTAGTAGGTAATTGGTTTATACCATTCTCAGATACCAAATCCGATCAAAAAGCTGCTGAAAGATCAATTGAGTTCATGTATGGATGGTTTATGGACCCATTAACAACAGGAGAATATCCAAAAAGTATGCGATCTCTTGTGAAATCACGGTTACCAAAGTTTACTGCAGAGCAAGCAAGGCTACTCATTGGTTCATTTGATTTTATTGGCTTAAACTACTATACTTCAACATATGCCTCTGATGCACCTCATTTAAGCAATGCTAGACCTAACTATGTGACTGATTCTTTAGTCATTTCTCAATTTGAGCGCAATGGGAAGCCCATAGGTATAAAGGTTGCTTCTGATTGGTTGTATGTTTGTCCAAGAGGAATTCGTGATCTTGTGTTATATACCAAGGAAAAGTATAATAATCCTTTGATTTACATCACTGAAAATGGTATAAACGAATTTAACGACCCAACACTATCACTGGAGGAATCTCTTTTAGACACTTACAGAATTGATTACTATTATCGTCATCTCTTTTATCTTCGTTCTGCAATTAGGAGTGGTGCAAATGTAAAGGGATATTACGCATGGTCTTTATTCGACAATTTTGAATGGTCCATGGGTTATACAGTGCGATTTGGAATGACATTCGTGGATTACAATAAAAATAGTTTGAAAAGATACGAGAAACTTTCTGCAATATGGTTCAAGAATTTTCTCAAGAAAAATAGTAGACTTTTTAGTTCT 1572 0.3798 MACKSFCILSLITFVLVISKSNVNCTETGAVDPILDIGSLNRDSFPPGFIFGAGSSSYQFEGAATEGGRGPSVWDTFTHKYPEKILDKSNGDVAIDTYHRYKEDVKFMKDMNLDSYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGIKPLVTLFHWDLPQSLEDEYGGFLSPLIIKDFRDYAEVCFKEFGDRVKHWVTLNEPWTYSINGYANGTMAPGRCSSWVNPNCTGGDSSTEPYLASHYQLLAHAAAVRVYRTKFQVSQKGLIGITLVGNWFIPFSDTKSDQKAAERSIEFMYGWFMDPLTTGEYPKSMRSLVKSRLPKFTAEQARLLIGSFDFIGLNYYTSTYASDAPHLSNARPNYVTDSLVISQFERNGKPIGIKVASDWLYVCPRGIRDLVLYTKEKYNNPLIYITENGINEFNDPTLSLEESLLDTYRIDYYYRHLFYLRSAIRSGANVKGYYAWSLFDNFEWSMGYTVRFGMTFVDYNKNSLKRYEKLSAIWFKNFLKKNSRLFSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu11g00657 524 FunFam Beta-glucosidase 12 32 517 - -
Lapu11g00657 524 ProSitePatterns Glycosyl hydrolases family 1 active site. 419 427 IPR018120 -
Lapu11g00657 524 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Lapu11g00657 524 PANTHER GLYCOSYL HYDROLASE 44 519 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 Pfam Glycosyl hydrolase family 1 42 519 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 SUPERFAMILY (Trans)glycosidases 35 516 IPR017853 -
Lapu11g00657 524 Gene3D Glycosidases 32 517 - -
Lapu11g00657 524 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Lapu11g00657 524 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu11g00657 Lapu-Chr11 9726203 9729242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu11g00657 9 520 Glycoside Hydrolase AT5G44640 54.191 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu11g00657 K01188 - gmx:106794108 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00657 11 9726203 9729242 Lapu11g00657 11 9726203 9729242 ECH
Lapu5g00305 5 2526851 2531558 Lapu11g00657 11 9726203 9729242 PCT