Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00242 ATGGCCATCTCTCCAATTTTCTTGTTTGCTATATTCTTTCTCATTTATGGCAATGGTGTTCTTCCCACTGAAGCCACCCACCATGTTTATAGAAATCTTCAGACTCTTTCTTCTCACTCCTCTCATCATGATCAACCTCATAGAACTGCTTATCATTTTCAGCCTCCTAAGAATTGGATAAATGATCCTAATGCACCAATGAGGTACAAAGGACTTTACCATCTGTTCTATCAATACAATCCAAAAGGTGCTGTTTGGGGCAATATTGTGTGGGCCCACTCAGTATCAAAGGATCTAGTGAATTGGACTCCACTAGATCATGCCATCTACCCTTCTCAGCAGTCTGATATCAACGGTTGTTGGTCAGGCTCAGCCACTATCCTTCCTGGGGGCAAACCAGCCATTTTATACACAGGAATTGACCCCAACAATCACCAAGTTCAAAACTTAGCCATACCCAAAAACTTCTCTGACCCATTACTTAGGGAATGGGTTAAGTCACCCAAAAATCCACTAATGGCCCCAACTAGTGCTAACCAGATCAATTCTAGCTCATTTAGGGACCCAACCACTGCTTGGCCAGGCAAAGATGGGTACTGGAGGGTGCTGATTGGAAGCAAAGTACACAGAAGGGGTATGGCAATTTTGTACAAGAGCAAAAACTTTGTTAATTGGGTCCAAGCCGAACACCCCCTTCATTCAGCAGAAGGCACTGGAATGTGGGAATGCCCTGATTTCTATCCAGTTCTGAACAAGAGCCCATTAACTACTGGCCTTGACACATCAGTGAATGGTGATAATGTTAGGCATGTGCTCAAGGTTAGCTTGGATGATACCAAACATGATCATTATTTGATTGGGACTTATGACTCTGCCAAGGATATCTTCACTCCGGATAATGGATTTGAGGATAGCCAACCCGTTTTAAGACACGACTATGGAAAATATTATGCCTCAAAAACCATTTTTGAAGATGGAAAGAACAGAAGGGTCTTATTTGGTTGGGTTAACGAATCCTCAAGTGTTGCTGATGATATCAAGAAAGGATGGTCCGGAATCCATACTATTCCAAGGGCCATTTGGCTTCATAAATCGGGGAAACAGTTGGTGCAATGGCCGGTGGTTGAAATTGAAAGCTTGCGTGTGAACCCTGTCCACTGGCCCTCCAAAGTGGTCAAAGGTGGTGAAATTCTTCAAGTGAATGGTGTTACTGCGGCACAGGCTGACGTTGAAATGTCATTTCTGGTGAATGAGTTGGGGAAGGCCGAAGTTTTGGACCATTGGGAAGATCCTCAAGTTCTGTGTGGTCGAAAGGGTGCAGCCGTAAAAGGTGGTTTGGGACCCTTTGGTTTGCTAGTTTTTGCTTCTCGTGGCTTGCAAGAGTATACAGCAGTGTTCTTTAGAATATTTAGATACCAAAATAAAAATTTGGTTCTCATGTGTAGCGACCAAAGCAGGTCTTCTTTGAATAAAGATAACGACAGAACCACCTATGGAACTTTTGTGGACGTGGACCCTCTCCATGAGAATCTCTCTCTAAGAACTTTGATCGATCACTCAGTAGTAGAAAGTTTTGAAGGAGAAGGAAGGGCCTGCATCACAGCAAGAGTATATCCCACAATAGCAATCAATGACAAGGCACAATTATATGCTTTCAACAATGGAACTGCCTCTGTCAAGATCACAAAATTGAGTGCTTGGAGCATGAAGAAGGCAAGAATCAACTGA 1728 0.4323 MAISPIFLFAIFFLIYGNGVLPTEATHHVYRNLQTLSSHSSHHDQPHRTAYHFQPPKNWINDPNAPMRYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIYPSQQSDINGCWSGSATILPGGKPAILYTGIDPNNHQVQNLAIPKNFSDPLLREWVKSPKNPLMAPTSANQINSSSFRDPTTAWPGKDGYWRVLIGSKVHRRGMAILYKSKNFVNWVQAEHPLHSAEGTGMWECPDFYPVLNKSPLTTGLDTSVNGDNVRHVLKVSLDDTKHDHYLIGTYDSAKDIFTPDNGFEDSQPVLRHDYGKYYASKTIFEDGKNRRVLFGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVVEIESLRVNPVHWPSKVVKGGEILQVNGVTAAQADVEMSFLVNELGKAEVLDHWEDPQVLCGRKGAAVKGGLGPFGLLVFASRGLQEYTAVFFRIFRYQNKNLVLMCSDQSRSSLNKDNDRTTYGTFVDVDPLHENLSLRTLIDHSVVESFEGEGRACITARVYPTIAINDKAQLYAFNNGTASVKITKLSAWSMKKARIN* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00242 575 SMART glyco_32 52 529 IPR001362 GO:0004553|GO:0005975
Lapu5g00242 575 SUPERFAMILY Arabinanase/levansucrase/invertase 43 374 IPR023296 -
Lapu5g00242 575 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 56 385 - -
Lapu5g00242 575 Gene3D Glycosyl hydrolase domain; family 43 56 383 IPR023296 -
Lapu5g00242 575 Gene3D - 384 569 - -
Lapu5g00242 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 16 573 - -
Lapu5g00242 575 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 385 569 - -
Lapu5g00242 575 Pfam Glycosyl hydrolases family 32 C terminal 376 568 IPR013189 -
Lapu5g00242 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 52 373 IPR013148 -
Lapu5g00242 575 CDD GH32_Fruct1-like 58 362 - -
Lapu5g00242 575 ProSitePatterns Glycosyl hydrolases family 32 active site. 52 65 IPR018053 GO:0004553|GO:0005975
Lapu5g00242 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 373 571 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00242 Lapu-Chr5 2007313 2010891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00242 67 575 Glycoside Hydrolase AT3G13790 64.023 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00242 K01193 - gmx:100776791 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00242 5 2007313 2010891 Lapu10g00462 10 6988362 6993835 PCT