Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00232 ATGGCGAACCATGACAAATGTTGTTCCACTCATCTTATTGAAGGAGATGGTACAATCAATGTTGCCGGAATCGAAAACTTCATGAAAGAGGTTAAATTAGGTGAATGTGGGCTTTCCTATGCTGTAGTTGCTATAATGGGTCCTCAAAGTAGTGGCAAGAGCACACTCTTAAATTGTTTGTTTAATACCAACTTCAGAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGACACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGCGAACAAGCTGCAAATAAGCCTCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACATTGCTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTACGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACTATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCCATCATTCTATCGCTCCAGGGGGCCTTGCAGGAGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCCTTTAGTGCTCAGGAAATCTGGAAAATCATTAAGGAGAATAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCTAATGAGAAGCATGACCTTTTTGCTGCAAATAAGGACTGGTGTGAGTTGAAAGAGGCTGTGCAATCTGGCCCTATTTCTGGTTTTGGGAAAAATGTCAATTCACTCCTTACCAGTTGTCTTTCAGAATATGATGCTGAAGCCAATTATTTTGACGAAGGTGTCCGATCGGCAAAGCAAAAGCAACTTCAAGAAAAACTGTTGCAACTTGTCCAACCAGCATTCCAAATTGCGCTGGGACATGTAAGGACCAGAGTTTTGGACAAGTTCAAGGAAACATTTGACAAGGTTTTGAACGGAGGGGAAGGTTTTTCTTCTGCTGCTAATACGTGCGTAGAGTCTTGTATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTCATTGAAATAGCAAACTGGGATACATCTAAAGTGAGGGAGAAGTTACGGCGTGATATTGATGCACATGTCTCATCTGTCCGCGCATCTAAGATATCAGAACTAGTTTCATCATATGAGGAAAATCTGAAGGAGGCATTATCTGCACCTGTTGAAACTCTATTGGATGGAGCTAGTAATGATACTTGGCCATCGATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCCGCTGAACTTGTCAGATATGATATGGATGAAGAAACAAAAAAGAGCATGATCGTGACTTTAGAGGATTATGCAAAGGGTGTGATAGAAGCCAGGGCTAGGGAAGAGGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGCCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATATTCGAGCCATCACAAAGTCTTCCCGCTCTGCATGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGTTTGGTTGATGCTGATGACATTTATGATATAGAGAAAACATTAACAGTTGCATTGGAAGATTCATCAAGCGGTTCTGGTAAAGATAAGAGTATAACAACACTCGATCCACTGGCTTCAAGCACTTGGGAGCAGGTACCAACCTCTAAAACATTGATCACACCTGTCCAGTGCAAGTCACTGTGGAGGAAATTCAAGATGGAGACAGAATATACTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGCTTGTTCTTGGATTTAATGAATTTATGACAGTTTTAAGAAATCCCTTGTATTTAGGCGTCATCTTTGTTGGCTATCTTCTCATGAAATCCCTATGGGTGCAGCTTGACATTGCGGGCGAATTTAAAAATGGAGCTCTTCCAGGAATAATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACAGGGCAGTGCAGCTGATAATCATAGTAGAAATTCATCAAAAAGCTATAACAGGCCCGTTCCTTCTGGTAGAGTTACATCATCTAGTGCTTCTTCTTCTGTAACTTCATTGGGCAATAGAACCGACTCAACCGAGTATACCAGTCCATCAAAAGACGAGTAG 2448 0.4195 MANHDKCCSTHLIEGDGTINVAGIENFMKEVKLGECGLSYAVVAIMGPQSSGKSTLLNCLFNTNFREMDAFKGRSQTTKGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSDFFIVEVVALSSFEEKEELFKEQVANLRQRFHHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKHDLFAANKDWCELKEAVQSGPISGFGKNVNSLLTSCLSEYDAEANYFDEGVRSAKQKQLQEKLLQLVQPAFQIALGHVRTRVLDKFKETFDKVLNGGEGFSSAANTCVESCMAQFDEGCADVVIEIANWDTSKVREKLRRDIDAHVSSVRASKISELVSSYEENLKEALSAPVETLLDGASNDTWPSIRKLLNRETQSAVSGFSAELVRYDMDEETKKSMIVTLEDYAKGVIEARAREEAGRVLIRMKDRFMTLFSHDSDSMPRIWTGKEDIRAITKSSRSACLKLLSVMAVIRLVDADDIYDIEKTLTVALEDSSSGSGKDKSITTLDPLASSTWEQVPTSKTLITPVQCKSLWRKFKMETEYTVSQAISAQEANNRSSNWLPPPWAIVALLVLGFNEFMTVLRNPLYLGVIFVGYLLMKSLWVQLDIAGEFKNGALPGIISLSSKFVPTIMNLIRKLAEEGQGSAADNHSRNSSKSYNRPVPSGRVTSSSASSSVTSLGNRTDSTEYTSPSKDE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00232 815 Gene3D - 17 246 IPR027417 -
Lapu5g00232 815 Hamap Protein SEY1 [SEY1]. 9 763 IPR008803 -
Lapu5g00232 815 PANTHER PROTEIN SEY1 5 776 IPR008803 -
Lapu5g00232 815 Coils Coil 218 238 - -
Lapu5g00232 815 MobiDBLite consensus disorder prediction 763 815 - -
Lapu5g00232 815 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lapu5g00232 815 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Lapu5g00232 815 CDD GBP 36 239 - -
Lapu5g00232 815 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lapu5g00232 815 MobiDBLite consensus disorder prediction 766 807 - -
Lapu5g00232 815 Pfam Sey1 three-helix bundle domain 323 761 IPR046758 -
Lapu5g00232 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 247 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00232 Lapu-Chr5 1906350 1915909 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00232 K22698 - gmx:100797516 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00232 5 1906350 1915909 Lapu10g00473 10 7089869 7100593 PCT