Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00473 ATGGCAAATAGTGAGACTTGTTGTTCAACTCAGCTTATTGATGGAGATGGTACATTCAATGTTTCTGGGGTTGAAAGCTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCCCAAAGTAGTGGCAAGAGCACGCTATTAAATAATTTGTTTGGTACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTACCGGCATAGAGCCTTGTACACTTGTTATGGACTTGGAGGGTACTGATGGAAGAGAACGCGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTATCAGATATAGTGTTGATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCTCACAAGGAAACTCCATTGAGTGAATTTTTCAACGTTGAAGTTGTTGCACTTTCTAGTTATGAAGAAAAGGAAGAACAATTCAAAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCATCATTCCATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCATTTAGTTCTGAGCATATATGGAAAGTCATCAAGGAGAACAAAGATCTTGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACCAATGAGAAATATGCCTCTTTTGCTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTGTTCCTGGATTTGGGAGAAAGCTCAGTTCACTCCTCGGTACTTGTTTATCAGAGTATGATGCTGAAGCCACATATTTCGATGAAGGTGTGAGATCTGCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCACCCAGCATTCCAATCTGCGTTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGATGCATTTGACAAGGCTTTGAATGGAGGGGAGGCGTTTTCTGTGGCTGCTAGTAATTGCAGTGGGTCTTGTATGGTTCAATTTGATGAATCATGTGCAGATATTATTGTTGAACAAACAAACTGGGATACATCTAAAGTGCGGGAGAAATTGCTGCGGGATATTGAAGCACATGTTGCAACTGTGCGTGCAGCCAAGATTTCTGAACTTACTTCATCATATGAGGAAAAACTTAAACAAGCTTTGTCTGGACCTGTCGAAGCTCTTTTGGACGGAGCTAATAGTGATACTTGGTCATCAATAAGGAACCTTCTTAAGCGTGAGACTGTATCAGCTGTTTCAGGCTACTCTGTTGCACTTACTGGGTTTGATATGAGTGAAGAAACAAGACAGAAAATGCTTGCAAGTTTAGAGGATTATGCTAGAGGTCTGGTAGAAGGAAAGGCTAGGGAAGAAGTAGGAAGAGTTCTAATCCGCATGAAGGACAGGTTTACAATGTTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGTAAAGAAGATATACGAGCCATCACCAAGACTGCTCGCTCTGCTTCTTTGAAGTTGCTATCTGTAATGGCTGCAATTCGTTTGGATGATGATGATGCTGACCATATTGAGAAAGTGTTATCAGTTGCTTTGGTGGAACCATCACCGAGTAGTAACGGTACAAGGAGCATGACATTGGTTGATCCACTAGCTTCTAGTAGCTGGGAGCAGGTTTCATCCTCTAAAACATTGATTACACCAGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAAGCCATTTCTGCACAGGAAGCCAACAAGCGCAACAACAACTGGTTACCTCCTCCTTGGGCGATAGCTGCTTTGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTAGGTTATCTTCTTGTTAAAGCCCTATGGGTGCAACTTGACATTGCGGGCGAATTTCGCAATGGAGCCCTTCCGGGACTCATATCCTTGTCTACCAAGTTTATTCCAACTATCATGAACCTAATGAAAAAACTAGCAGAGGAGGGACAGAACCATGCAGCTAACAATCCTCAGAGAACAACCCCATCAAAAAACAGCTACAACGAGAGTCATGCCGTGTCGTCGAGCGCGTCATCTAACCTGACTGCATTGGACAACGGAACTGAGTATGGCAGTCCAGTCAAAGATGAGTAG 2430 0.4288 MANSETCCSTQLIDGDGTFNVSGVESFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSEHIWKVIKENKDLDLPAHKVMVATVRCEEITNEKYASFAANEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEATYFDEGVRSAKQKQLQEKLFQLVHPAFQSALGHIRSGTLDKFKDAFDKALNGGEAFSVAASNCSGSCMVQFDESCADIIVEQTNWDTSKVREKLLRDIEAHVATVRAAKISELTSSYEEKLKQALSGPVEALLDGANSDTWSSIRNLLKRETVSAVSGYSVALTGFDMSEETRQKMLASLEDYARGLVEGKAREEVGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDDADHIEKVLSVALVEPSPSSNGTRSMTLVDPLASSSWEQVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIAALVILGFNEFMTLLRNPLYLGVIFVGYLLVKALWVQLDIAGEFRNGALPGLISLSTKFIPTIMNLMKKLAEEGQNHAANNPQRTTPSKNSYNESHAVSSSASSNLTALDNGTEYGSPVKDE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00473 809 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Lapu10g00473 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 276 IPR027417 -
Lapu10g00473 809 PANTHER PROTEIN SEY1 5 781 IPR008803 -
Lapu10g00473 809 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Lapu10g00473 809 Coils Coil 218 238 - -
Lapu10g00473 809 MobiDBLite consensus disorder prediction 763 799 - -
Lapu10g00473 809 Gene3D - 16 245 IPR027417 -
Lapu10g00473 809 MobiDBLite consensus disorder prediction 762 809 - -
Lapu10g00473 809 CDD GBP 36 239 - -
Lapu10g00473 809 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
Lapu10g00473 809 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 18 273 - -
Lapu10g00473 809 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00473 Lapu-Chr10 7089869 7100593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00473 K22698 - gmx:100777656 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00232 5 1906350 1915909 Lapu10g00473 10 7089869 7100593 PCT