Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu5g00221 | ATGGCTGGAATTGTAGTGGTTTTTGACTTTGACAAGACCATTGTCGACTGTGACAGTGATAACTGGGTTGTTGATGAGTTGGGTTTCAATGTTTTGTTCAATCGTCTCCTTCCTACCATGCCTTGGAACACTCTCATGGATAGGATGATGGTGGAGCTTCATTCCCATGGAAAAACCATTGATGACATTGTGCAGGTTCTTCAGAGGATTCCTATACACCCCAGAATAATCCCTGCCATTAAAGCAGCTCGTGCTTTAGGGTGCGATTTGAGGATTGTAAGTGATGCAAACACATTCTTCATCGAGACAATTTTAAAACACTTAAAAATAAGGGAATGCTTCTCAGATATCAACACAAATCCAAGTTATATTAATGAAGATGGAAGACTACAGATATTGCCTTACCATGACTTCAACAAGTTTCCACATGGATGCACTTTGTGCCCTCCCAACATGTGCAAGGGTCAAATCATAGAGAAAATCCAAGAGTCATTAGAAGAAAAGAGATTGATCTATCTTGGGGATGGTAGTGGGGACTATTGCCCAAGTTTGAGGCTGAAAGAGCAAGACTTTGTGATGCCCAGAAAGAATTTTCCTGTGTGGGAATTGATATGCAAAGACCCTTTACTTATCAAAGCTGAAATTCATGAATGGAGCAATGGAGAAGAGCTTGAACGAATTTCTTTGCAGCTAATCAACAAAATTTGTTTGGGAGAAAGTGCCGAGTTCATCTCACCCAATTGCAATCTGCACATTATGTGCGTGTTTGGTTCCGATTAA | 780 | 0.4051 | MAGIVVVFDFDKTIVDCDSDNWVVDELGFNVLFNRLLPTMPWNTLMDRMMVELHSHGKTIDDIVQVLQRIPIHPRIIPAIKAARALGCDLRIVSDANTFFIETILKHLKIRECFSDINTNPSYINEDGRLQILPYHDFNKFPHGCTLCPPNMCKGQIIEKIQESLEEKRLIYLGDGSGDYCPSLRLKEQDFVMPRKNFPVWELICKDPLLIKAEIHEWSNGEELERISLQLINKICLGESAEFISPNCNLHIMCVFGSD* | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu5g00221 | 259 | NCBIfam | HAD-IB family phosphatase | 5 | 184 | - | - | |
| Lapu5g00221 | 259 | Gene3D | - | 2 | 186 | IPR023214 | - | |
| Lapu5g00221 | 259 | PIRSF | PLP_phosphatas_PHOSPHO2 | 1 | 236 | IPR016965 | GO:0016791 | |
| Lapu5g00221 | 259 | Pfam | Putative Phosphatase | 4 | 232 | IPR016965 | GO:0016791 | |
| Lapu5g00221 | 259 | PANTHER | PHOSPHATASE, ORPHAN 1, 2 | 1 | 235 | IPR016965 | GO:0016791 | |
| Lapu5g00221 | 259 | SUPERFAMILY | HAD-like | 5 | 187 | IPR036412 | - | |
| Lapu5g00221 | 259 | NCBIfam | MtnX-like HAD-IB family phosphatase | 4 | 196 | IPR006384 | GO:0016791 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu5g00221 | Lapu-Chr5 | 1817060 | 1818792 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu5g00221 | K13248 | - | gmx:100801052 | 438.728 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu10g00488 | 10 | 7242132 | 7244372 | Lapu5g00221 | 5 | 1817060 | 1818792 | ECH | |
| Lapu3g03725 | 3 | 60731556 | 60732707 | Lapu5g00221 | 5 | 1817060 | 1818792 | ECH | |
| Lapu5g00221 | 5 | 1817060 | 1818792 | Lapu5g00221 | 5 | 1817060 | 1818792 | ECH | |
| Lapu10g00489 | 10 | 7245959 | 7248591 | Lapu5g00221 | 5 | 1817060 | 1818792 | PCT |