Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00220 ATGAACGGTAGCGATGAGGTTGTGGCAGCTCCGGCGGGTCCACCGCACCCTCTGGACTGGAAATTCTCGCAGGTCTTCGGGGAACGCACGGCAGGAGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCACCTTGCGACTGGTGATCGGGGTGGCCGAGTGGTGCTCTTTGAGAGAACAGATGCAAAAGATCATGGTGCATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCTGAGTTTGACTATCTTAAGAGCTTGGAGATTGAAGAAAAAATCAACAAAATCAGATGGTGCCTAACAGCTAATGGTGCCCTCTTCCTTCTCTCTACAAATGATAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAAAAAATTTCTGAGATGAATATTGACCTTTCAAAATCAATGGGGAATGGATGTATTGCTAGTTCAAGCAATTCAAGTAACTCTAGGCCATATCTTGCAAATGGTGGATCTCCGGATAGATCATACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCTTCACTAAGATTACCCATGGTAAGTAGCCATGAAAGCAGCCTAGTTGCTCGATGTCGTAGAGTGTATGCTCACGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCTGCTGATGATTTGCGAATAAACCTTTGGAACCTGGAAATTAGCAGTCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTAATAACATCAGCAGAATTTCACCCCACACATTGTAATATGTTGGCTTATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGACAATCAGCATTATGCGATTCTCATTCCAAACTATTTGAGGAACAGGAAGCCCCAGGCTCCAGATCATTTTTCACAGAGATTATTGCTTCTATATCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAAGTTCATGAGTATTTAAGACCCAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGACAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTGGCAACTGGTTCTTACAGCAATCTCTTCCGAGTGTTTGGTTGTGCCCCTGGAAGTGCTGAGGCGACAACCCTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTTTAACACGAGTTGTAAGACGGGGAGCAGAAGCCCCTGGGGTGGATGCTAATGGGAATTCTTTTGACTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCGACTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATAGAGCTTTTAGAAAAAGATCCAGAAGTGGCTGTTTCCAAATTCCTGGCTAG 1593 0.4187 MNGSDEVVAAPAGPPHPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDHGASRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCLTANGALFLLSTNDKTIKFWKVQEKKVKKISEMNIDLSKSMGNGCIASSSNSSNSRPYLANGGSPDRSYNYISNDFSFPPGGIPSLRLPMVSSHESSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYRAFRKRSRSGCFQIPG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00220 530 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 232 246 IPR018067 -
Lapu5g00220 530 SUPERFAMILY WD40 repeat-like 39 508 IPR036322 GO:0005515
Lapu5g00220 530 SMART WD40_4 105 145 IPR001680 GO:0005515
Lapu5g00220 530 SMART WD40_4 223 262 IPR001680 GO:0005515
Lapu5g00220 530 SMART WD40_4 273 313 IPR001680 GO:0005515
Lapu5g00220 530 SMART WD40_4 332 370 IPR001680 GO:0005515
Lapu5g00220 530 SMART WD40_4 374 428 IPR001680 GO:0005515
Lapu5g00220 530 SMART WD40_4 31 66 IPR001680 GO:0005515
Lapu5g00220 530 Gene3D - 72 514 IPR015943 GO:0005515
Lapu5g00220 530 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Lapu5g00220 530 PIRSF PPA2_B55 12 517 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 MobiDBLite consensus disorder prediction 443 462 - -
Lapu5g00220 530 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 511 - -
Lapu5g00220 530 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 514 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Lapu5g00220 530 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 401 427 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 484 513 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 234 261 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 262 289 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 346 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 290 318 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 375 400 IPR000009 GO:0000159|GO:0019888
Lapu5g00220 530 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 347 374 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00220 Lapu-Chr5 1800460 1809498 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00220 K04354 - gmx:100799449 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00491 10 7266085 7275658 Lapu5g00220 5 1800460 1809498 ECH
Lapu5g00220 5 1800460 1809498 Lapu5g00220 5 1800460 1809498 ECH
Lapu5g00220 5 1800460 1809498 Lapu10g00491 10 7266085 7275658 PCT