Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00491 ATGAACGGTGGTGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCAACCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGGGAACGTACGGCGGGGGAGGAAGTTCAGGAAGTGGACATTATTTCTGCAATTGAGTTTGACAAGTCCGGTGATCATCTTGCTACCGGTGATCGTGGTGGACGAGTAGTTCTCTTTGAGAGAACAGATACAAAAGATCATCGTGGATCAAGAAGGGATTTGGAAAGGATGGACTATTCTATTAGTAGACATCCTGAGTTCCGTTATAAAACAGAGTTTCAGAGCCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGTCAAACCGCTAATGGTGCTCTATTCCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAATGTTGATGCTAAAGCAACGGGAAATGGCTCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAGATCATTTCTTGCAAATGGAGTATCTCCAGATGGACCGTACAATTATTTAAGCAACGATTTCTCATTTCCACCAGGAGGCATACCTTCACTTAGATTACCATTGGTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGCCGGAGAGTATATGCCCATGCACATGATTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAACACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGATCCCGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATATATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATCAATATGGATTCTGGCCCGGTTGCTACATTCCAGGTTCATGAGTATTTAAGGCCAAAGCTTTGTGATTTGTATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGTGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGCCAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCCGAAAGCACCGGAGTTGATGCAAATGGGAATTCTTTTGATTTCACTACAAAGTTGCTGCACTTAGCATGGCACCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATCAGGAGCTTTTAGAAAAAGATCCAGAAGTGGCTGTTTCAAAATTCCTGGGTAGGCAGACCTTATTTTGTTTCTGGATGGGCAGCATAATCTCTTTTTTTCAATTTTCCTCCTCCCAACCCTAA 1662 0.4103 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISDMNVDAKATGNGSIASSSNSSSSRSFLANGVSPDGPYNYLSNDFSFPPGGIPSLRLPLVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYQELLEKDPEVAVSKFLGRQTLFCFWMGSIISFFQFSSSQP* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00491 553 PIRSF PPA2_B55 11 516 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 514 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
Lapu10g00491 553 Gene3D - 213 514 IPR015943 GO:0005515
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Lapu10g00491 553 SUPERFAMILY WD40 repeat-like 39 430 IPR036322 GO:0005515
Lapu10g00491 553 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Lapu10g00491 553 SMART WD40_4 105 145 IPR001680 GO:0005515
Lapu10g00491 553 SMART WD40_4 272 312 IPR001680 GO:0005515
Lapu10g00491 553 SMART WD40_4 222 261 IPR001680 GO:0005515
Lapu10g00491 553 SMART WD40_4 331 369 IPR001680 GO:0005515
Lapu10g00491 553 SMART WD40_4 31 66 IPR001680 GO:0005515
Lapu10g00491 553 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Lapu10g00491 553 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 208 510 - -
Lapu10g00491 553 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lapu10g00491 553 Gene3D - 36 199 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00491 Lapu-Chr10 7266085 7275658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00491 K04354 - gmx:100789058 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00491 10 7266085 7275658 Lapu5g00220 5 1800460 1809498 ECH
Lapu10g00491 10 7266085 7275658 Lapu10g00491 10 7266085 7275658 ECH
Lapu5g00220 5 1800460 1809498 Lapu10g00491 10 7266085 7275658 PCT