Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00214 ATGTTCAACGTAGCCATGGTTTTTTTCTTCAGTAGGATCAACTTGTTCATCTTTTTTCATCTCCTTGTTGCAACACCCATCTTCTCAGAATCCTCCTTCGTCTCAAATGCAATCTCCACCACCAAGTTCCTAGATTTAGCCAAGGATCCTCGGCTTTTTGATTGGATGGTAGGTATCAGGCGGAAGATTCACGAGAATCCAGAGCTGGGTTATGAGGAATTTGAGACCAGTAAGCTGATAAGAGTGGAATTGGATAAATTGGGCATCTCATATAAATACCCAGTTGCAGTAACTGGTGTTATTGGCTTCATAGGGACTGGGCTCCCTCCTTTTGTTGCATTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAATTGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATATTGCCATGCTTCTCGGTGCGGCAAAGATCCTCAAAGAGCATGAAAATGAGATTCGAGGAACTGTTGTTCTTGTTTTTCAACCAGCTGAAGAAGGAGGTGCAGGGGCTAGGAAAATTCTAGATGCTGGAGTCTTGGAAAATATCTCTGCCATATTTGGATTGCATCTTACACCTACCTTTCCTATTGGTGAAGTGGGCTCTAGGGCGGGCCCTATATTTGCAGGAAGCGGCTTCTTTGAAGCAACAATAAATGGCAGGGGAGGTCATGCAGCTATCCCTCAGCACTCTATAGACCCAATATTGGCAGCTTCCAATGTGATTGTTAGCTTACAGCATATTGTATCTCGTGAGGCCAATCCTCTGGACTCCCAGGTTGTGACTGTAGGAAAATTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACGATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAACTGAGACAGCGGATTGAGCAGGTTATCACTGGGCAAGCTGCTGTTCAGAGATGCAATGCAACGGTGAACTTTCTTGACGAAGAAAAACCTTTCTTCCCCCCAACAGTGAACAATGGGGACTTGCATGAGTGGTTTAAAAGTGTTGCAGGGAGTTTAATTGGGGCCGATAAAGTTAAGGACTTTCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCAGGATACTTCTTCCTCCTTGGAATGGAGGATGCCTCTGTTGAGCGTCTTGAGTTACCACACTCTCCATATTACAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTATCAACTGTCTTCTCAAATTAAATAAAGACATACCAGTAGTGGAGGGGAAGCGTCATGATGAATTATAG 1350 0.4415 MFNVAMVFFFSRINLFIFFHLLVATPIFSESSFVSNAISTTKFLDLAKDPRLFDWMVGIRRKIHENPELGYEEFETSKLIRVELDKLGISYKYPVAVTGVIGFIGTGLPPFVALRADMDALPMQELVEWEHKSKVPGKMHACGHDAHIAMLLGAAKILKEHENEIRGTVVLVFQPAEEGGAGARKILDAGVLENISAIFGLHLTPTFPIGEVGSRAGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREANPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDEEKPFFPPTVNNGDLHEWFKSVAGSLIGADKVKDFQPLMGSEDFAFYQEVFPGYFFLLGMEDASVERLELPHSPYYKINEDALPYGAALHASLAINCLLKLNKDIPVVEGKRHDEL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00214 449 Gene3D - 221 339 - -
Lapu5g00214 449 FunFam N-acetyldiaminopimelate deacetylase 221 339 - -
Lapu5g00214 449 SUPERFAMILY Zn-dependent exopeptidases 51 431 - -
Lapu5g00214 449 PANTHER PEPTIDASE M20 FAMILY MEMBER 33 436 IPR017439 GO:0016787
Lapu5g00214 449 Pfam Peptidase family M20/M25/M40 113 427 IPR002933 GO:0016787
Lapu5g00214 449 SUPERFAMILY Bacterial exopeptidase dimerisation domain 221 340 IPR036264 -
Lapu5g00214 449 PIRSF Amidohydrol_AmhX 42 435 IPR017439 GO:0016787
Lapu5g00214 449 NCBIfam amidohydrolase 56 418 IPR017439 GO:0016787
Lapu5g00214 449 Gene3D Zn peptidases 56 416 - -
Lapu5g00214 449 Pfam Peptidase dimerisation domain 222 319 IPR011650 -
Lapu5g00214 449 CDD M20_IAA_Hyd 56 431 IPR044757 GO:0009850|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00214 Lapu-Chr5 1771541 1775472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00214 K21604 - gmx:100794121 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00214 5 1771541 1775472 Lapu5g00214 5 1771541 1775472 ECH
Lapu5g00214 5 1771541 1775472 Lapu10g00502 10 7385407 7392725 PCT