Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00202 ACATTTACATTCTCTTCTCGCTCAAATATCATGACCCCACTCCTTAGAACCATTCTCATTGCCCACAAGCTCCACCTTCGCTACCCCAAATGCATTTTCCCACCTCTCCTTTCCCACTACTCCACGGCGGATTCCTCCGAAGCCGACCACACACAGAAACCAACAAACGAAACCGCCACCACCAGTTGGAGCAGATATGGTAACGTCTATTCCCGCCCAGTTGTGCAGCACACTGATCACAGCAACAGAGATGAAAACCCTAGCAGTTTGAAGGGAAATGATGTAGCAGTGGCGAAGAAAAAGGGGAAGGTCAAAACTCAGTGGGTGTGCTCCTATTGTGGGCACACGACGGGGAGATGGTGGGGAACATGCCCCGAATGCGAAGTAACTGGTACAATGCAAGAGTTTCACGAGAGCAAGTTAACTGACAAACCCAGAGGTGGGTTAGCCATTACCGAGGACGCAGCGGGCTCGTGGCTCCCACGGCGACCCGAAGAGTTGCGTCCCATCAAATTGGAAGAGGTTAACCGCGGATTCAATCATGACAAATGGAGAATTCCTTTGTCTGGTTCCCTCGGAAATGAAGTTTCTACAGTGCTTGGTGGAGGTCTCGTACCAGGTTCTTTAACTTTAGTTGGTGGTGATCCTGGTATTGGGAAAAGTACTCTGTTGTTGCAGATTTCAGCAATGATAGCAAATGAATGCAGTGATGGTGAAACACCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTAAGCAAATTTGTGCTAGAGCAGATCGCCTTGGGATCAAGTCCAATATTTATTTATATTCAAGTACTGATATTGAGGACATACTGAGGAAAACTCATGGTCTATCCCCTTGTGCTCTGGTCGTTGATTCAATACAGACTGTTTACCTGAATACAGTAATAGGAAGTGCTGGAGGGGTTATGCAGGTGAAGGAATGTACTGCAGCTTTGATGCGATTTGCTAAAACAACTAACATCTCAGTTATTTTGATTGGACATGTGACCAAATCTGGAGAGATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTCGTTTTGTATATGGAAGGCGAGAAGTACTCTCCATATCGAATGCTTCGAGCTGTGAAAAATCGCTTTGGTTCCACAGATGAGCTTGCAGTTCTTGAGATGTCACAGTCAGGACTTCAGGTTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAATACTCTGATTCAAATGTTTTAGCTGGACTTGCTATTGCTGTAATAATGGATGGCACAAGAACATTTTTAGTTGAAATTCAGGCACTTTGCCTTACACATTGCCCAGTTTCGAGTTCACAATCCAATGGGATCCACGCAAACAAAGCTCATATTATTAAATGTGTACTTATAAAGCAAGCAGGTCTTCATCTCCAAGATAATGCCGTGTTTTTGAATGTTGTTAGCGGATTGACAGTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCACAGGGGACTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTTAACGCATTGGCGAAGTTGGGTTACAGAATGTGTGTAGTACCAAAGCAAGCTGAAAAACTTTTAGGAACCGAAGGTCTAGAAGAAATGAAAGTTGTAGGTTGCAAGGATCTGAAGGAGGTTATTAACGCTGTGTTCCGTAGAGATAAT 1752 0.4469 TFTFSSRSNIMTPLLRTILIAHKLHLRYPKCIFPPLLSHYSTADSSEADHTQKPTNETATTSWSRYGNVYSRPVVQHTDHSNRDENPSSLKGNDVAVAKKKGKVKTQWVCSYCGHTTGRWWGTCPECEVTGTMQEFHESKLTDKPRGGLAITEDAAGSWLPRRPEELRPIKLEEVNRGFNHDKWRIPLSGSLGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIANECSDGETPPVVYVSGEESLKQICARADRLGIKSNIYLYSSTDIEDILRKTHGLSPCALVVDSIQTVYLNTVIGSAGGVMQVKECTAALMRFAKTTNISVILIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNASEMFLTQQYSDSNVLAGLAIAVIMDGTRTFLVEIQALCLTHCPVSSSQSNGIHANKAHIIKCVLIKQAGLHLQDNAVFLNVVSGLTVTETAGDLAIAAAICSSFLEFPIPQGTAFIGEIGLGGELRMVPRIDKRVNALAKLGYRMCVVPKQAEKLLGTEGLEEMKVVGCKDLKEVINAVFRRDN 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00202 584 FunFam DNA repair protein radA isogeny 413 583 - -
Lapu5g00202 584 NCBIfam DNA repair protein RadA 103 575 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lapu5g00202 584 Pfam AAA domain 199 342 - -
Lapu5g00202 584 Pfam Subunit ChlI of Mg-chelatase 465 551 - -
Lapu5g00202 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 388 IPR027417 -
Lapu5g00202 584 ProSiteProfiles RecA family profile 1. 182 338 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lapu5g00202 584 FunFam DNA repair protein RadA 184 395 - -
Lapu5g00202 584 Pfam Rubredoxin metal binding domain 108 135 IPR041166 -
Lapu5g00202 584 SUPERFAMILY Ribosomal protein S5 domain 2-like 375 580 IPR020568 -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 294 318 - -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 333 361 - -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 444 467 - -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 368 394 - -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 198 226 - -
Lapu5g00202 584 PRINTS DNA repair protein radA signature 110 134 - -
Lapu5g00202 584 Gene3D - 195 397 IPR027417 -
Lapu5g00202 584 CDD RadA_SMS_N 108 397 - -
Lapu5g00202 584 SMART AAA_5 206 364 IPR003593 GO:0016887
Lapu5g00202 584 PANTHER DNA REPAIR PROTEIN RADA 51 582 - -
Lapu5g00202 584 Gene3D - 408 584 IPR014721 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00202 K04485 - gmx:100791181 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00202 5 1650211 1662280 Lapu5g00202 5 1650211 1662280 ECH
Lapu5g00202 5 1650211 1662280 Lapu10g00515 10 7479042 7501777 PCT