Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00515 ATGCTTTCCTTCTCCATTTCTGGTTTCCCTCCATTCCCACTCCGCAGGGCATATCCAAGAGTTTGTGCAAGCTTTGGCATTGACACCCCACAGGACCCCAAGTCAACCAGCTCTCATGGCTCCAATGCTAAATTTGATGAAGAATTTCGAAAGGGAAAGGAAAGAGGGAGAGTGATGGGAGGTAGTGATGGTGGTGGTGGGGTTGTTATTGGGAGGAAGAAGAAGTCGAAGGAGAAAGTTGAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGGCAATGGTGGGGCGTGTGCCGATCATGCAATGTATCTGGAACTATGAAAGAGGCCAAATTCAGTAGTGATGCTGATAGTATGATTAGTGGGTTTTCAGTATTGGAGGATGGTGTGGGGTCTTGGCTACCACAACAGGAGGGAGAGTTACGCCCCTTGAGATTGACAGAGGTAAACAGGGGACTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCATTTGGAGATGAAGTTTCCAGAGTGCTTGGCGGTGGTCTCGTACCAGGCTCATTGACTTTAATTGGTGGCGATCCTGGTGTTGGGAAGAGTACTCTTTTGCTGCAGATAGCTTCAATTATTGCAGAAGGGCACCATGATGCTGAGGCATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGTCTTAGGATTCAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGACATATTGAAGAAAGTTCAGTATCTGTCCCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTCCGATTTGCAAAGAAGACAAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATATTGTTCTATATATGGAAGGTGAGAAATACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAATTTTTGAGATGTCACATTCAGGACTTCAGGCTATTTCAAATGCCAGTGAAATGTTTCTCAGTGAACAACACCTGGATTCAGAAATTTTAGCTGGGCTAGCTGTTGCTGTAATCATGGATGGGTCCAGGACGTTTCTTATTGAAATTCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGGCAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACATTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGCATAGTACCCAAGGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTGTTTCCCAATATAATGAAAAGGAGTTCATTCTCTTCCTCCTCACTCCTCGCCATGTACAGAGCAGCAGCTTCTTCATTCAGAAGGCATCTCAAGGTCGGCCATGGAAGCAAGTTGGGATCCACTAGGTCCTCCACTTCAGCCGCTGTAGCTGCAAGGACTTCCCAAGGTGGTTTGTTTAGCTGGCTTACTGGGGAGCGTTCTAGTTCTCTTCCTTCTTTGGATATACCCCTTGGTGGTGTTGTTCTCCCAGATCCACTTCCAGATTCTGTTGAACAAAGCAAGACCAAGATCACAACACTCTCCAATGGACTCAAAATAGCATCAGAGACATCGCCTAACCCTGCAGCTTCAATTGGGTTATATCTTGACTGTGGTTCCATCTATGAGACACCATTCTCAAGTGGAGCTTCACACTTACTAGAGCGAATGGCTTTCAAAAGCACAACAAACCGTAGTCACTTTCGTATTGTAAGGGAAGTAGAAGCTATTGGTGGTAATATAGGAGCCTCAGCCTCGCGGGAGCAAATGGGATATACATTTGATGCCTTGAAAACCTATGTTCCACAAATGGTGGAACTACTGGTTGACTGTGTAAGGAACCCTGCCTTCTTGGACTGGGAGGTCAATGAAGAGCTTCGGAAGGTGAAAGCAGAGCTTGGAGAACTCTCCAACAATCCCCAGGGCCTGCTTTTGGAAGCAATTCACTCTGCTGGTTATTCTGGTGCATTGGCTTATCCTCTCTTAGCTCCTGAAGGAGCATTGAACAGATTGGACGGCCCTGGTTTAGAGGAATTTGTTGCTGAGAATTACACTGCACCTAGAATGGTACTTGCAGCAGCTGGGGTTGAGCATGAAGAACTTGTGTCTATTGCTGAGCCACTTCTCTCTGATCTACCAAATGTCCCCCGTCCTGATGAACCTAAATCTGTCTATGTTGGTGGTGATTTCCGTCGTCATGGTGAATCAGGGGGTACACATGTTGCTCTTGCTTTTGAACTGCCTGGTGGATGGCATAAAGAGAAAGATGCTATAGTTTTGACTGTTTTACAGATGCTTATGGGAGGAGGTGGGTCATTTTCAGCTGGTGGCCCTGGAAAAGGGATGCACTCAAGGCTATATCTTCGTGTGCTGAATGAATATCAACAGATTCAATCTTTTTCTGCATTCAACAGCATCTTCAATAATACAGGATTATTTGGCATTTATGCAAGCACTAGCCCTGATTTTGCACCAAAGGCTGTGGATATAGCAGCCAAAGAACTAATAGCAATTGCTTCCCCTGGACAAGTTACACAGGTACAGCTTGACCGAGCCAAAAAATCCACAAAGTCGGCAGTTCTAATGAATCTGGAATCTAGAATGATTGCATCAGAAGATATTGGAAGGCAGATTTTGACTTATGGAGAAAGGAAGCCTTTGGAACAGTTCCTGAAGGCTGTAGATGCAATCACGTTGAACGATATCACTAAAATTGCTCAGAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGTCCTTAATGTGCCCAGTTATGAATCAGTTAACAGCAAGTTCCATGCAAAATGA 3231 0.4392 MLSFSISGFPPFPLRRAYPRVCASFGIDTPQDPKSTSSHGSNAKFDEEFRKGKERGRVMGGSDGGGGVVIGRKKKSKEKVEWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSSDADSMISGFSVLEDGVGSWLPQQEGELRPLRLTEVNRGLDHHHWRIPLSGPFGDEVSRVLGGGLVPGSLTLIGGDPGVGKSTLLLQIASIIAEGHHDAEASPVVYVSGEESVEQIGNRADRLRIQSDIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDIVLYMEGEKYSSHRMLRAVKNRFGSTDELGIFEMSHSGLQAISNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEVINTVFPNIMKRSSFSSSSLLAMYRAAASSFRRHLKVGHGSKLGSTRSSTSAAVAARTSQGGLFSWLTGERSSSLPSLDIPLGGVVLPDPLPDSVEQSKTKITTLSNGLKIASETSPNPAASIGLYLDCGSIYETPFSSGASHLLERMAFKSTTNRSHFRIVREVEAIGGNIGASASREQMGYTFDALKTYVPQMVELLVDCVRNPAFLDWEVNEELRKVKAELGELSNNPQGLLLEAIHSAGYSGALAYPLLAPEGALNRLDGPGLEEFVAENYTAPRMVLAAAGVEHEELVSIAEPLLSDLPNVPRPDEPKSVYVGGDFRRHGESGGTHVALAFELPGGWHKEKDAIVLTVLQMLMGGGGSFSAGGPGKGMHSRLYLRVLNEYQQIQSFSAFNSIFNNTGLFGIYASTSPDFAPKAVDIAAKELIAIASPGQVTQVQLDRAKKSTKSAVLMNLESRMIASEDIGRQILTYGERKPLEQFLKAVDAITLNDITKIAQKIISSPLTMASYGDVLNVPSYESVNSKFHAK* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00515 1076 CDD RadA_SMS_N 82 371 - -
Lapu10g00515 1076 Gene3D - 168 369 IPR027417 -
Lapu10g00515 1076 ProSitePatterns Insulinase family, zinc-binding region signature. 677 700 IPR001431 GO:0004222|GO:0006508
Lapu10g00515 1076 ProSiteProfiles RecA family profile 1. 159 312 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lapu10g00515 1076 MobiDBLite consensus disorder prediction 29 70 - -
Lapu10g00515 1076 SUPERFAMILY LuxS/MPP-like metallohydrolase 646 856 IPR011249 GO:0046872
Lapu10g00515 1076 Gene3D - 861 1072 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 268 292 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 84 108 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 172 200 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 307 335 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 417 440 - -
Lapu10g00515 1076 PRINTS DNA repair protein radA signature 342 368 - -
Lapu10g00515 1076 Pfam Peptidase M16 inactive domain 814 992 IPR007863 -
Lapu10g00515 1076 FunFam DNA repair protein RadA 163 369 - -
Lapu10g00515 1076 Pfam AAA domain 173 316 - -
Lapu10g00515 1076 SMART AAA_5 180 338 IPR003593 GO:0016887
Lapu10g00515 1076 PANTHER DNA REPAIR PROTEIN RADA 44 555 - -
Lapu10g00515 1076 SUPERFAMILY LuxS/MPP-like metallohydrolase 874 1067 IPR011249 GO:0046872
Lapu10g00515 1076 MobiDBLite consensus disorder prediction 41 58 - -
Lapu10g00515 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 363 IPR027417 -
Lapu10g00515 1076 Pfam Insulinase (Peptidase family M16) 658 802 IPR011765 -
Lapu10g00515 1076 NCBIfam DNA repair protein RadA 77 547 IPR004504 GO:0003684|GO:0005524|GO:0006281
Lapu10g00515 1076 FunFam mitochondrial-processing peptidase subunit alpha 861 1069 - -
Lapu10g00515 1076 SUPERFAMILY Ribosomal protein S5 domain 2-like 349 553 IPR020568 -
Lapu10g00515 1076 FunFam DNA repair protein radA isogeny 387 556 - -
Lapu10g00515 1076 Gene3D - 388 567 IPR014721 -
Lapu10g00515 1076 Gene3D - 637 849 - -
Lapu10g00515 1076 Pfam Subunit ChlI of Mg-chelatase 434 523 - -
Lapu10g00515 1076 Pfam Rubredoxin metal binding domain 82 109 IPR041166 -
Lapu10g00515 1076 FunFam Mitochondrial-processing peptidase subunit beta 637 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00515 Lapu-Chr10 7479042 7501777 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00515 K01412 K04485 gmx:100794165 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00515 10 7479042 7501777 Lapu10g00515 10 7479042 7501777 ECH
Lapu5g00202 5 1650211 1662280 Lapu10g00515 10 7479042 7501777 PCT