Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00132 ATGGAGTTGATTTCAGGTTTACCTGAGGACGTTGCCCGAGACTGTTTAATTAGGGTTCCGTACGAGCAATTCGCGGTCGTCGCATCCGTCTGCAAAGGCTGGAACTCGGAGATTCACTCGCCGGAGTTTCACCGTCGTAGGAGAACCGCAAAGCATGCACAAAATATCCTCGTTACCGTTCAATCCAAAATAGACTCCGAAAAAGCCCGAACCGGCTTACTCGCGAAGTCCTCTGCGAATCCGGTTTACCGGCTGAGCGTGTTCGAACCGAAAACGGGTCTGTGGAGCGAGTTGCCCTTGGGACCCGAACTCACTTCCGGGTTACCCATGTTCTGTCAGATAGCGGGTGTCGGGTACGAGCTTGTCGTTATGGGCGGGTGGGACCCAGATTCGTGGAAAGCGTCGAATTCGGTTTTTATCTACAACTTTCTGTCGGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCCGCACGTTTTTCGCATGCGCGTCTGATCAAAATCACATGGTGTACGTCGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAAGTCAGCGCTTGCGTATGACGTGGCGAACGACGTGTGGGTTTCGCTCCCGGACATGTCCCGCGAGCGCGACGAGTGCAAGGCCGTATTCCGCCGCGGTGCGCTCTGCGTCGTGGGTGGCTACTGCACGGAGATGCAGGGGCGGTTCGAGCGGAGCGCGGAGGTTTTCGACGAGGCCACGTGGAGGTGGGCCCCGGTGGAGGAAGAGTTCTTGGATGCGGCCGCGTGTCCTCGCACATGCGTGGACGGTGGGAATGGTGCGGAAGGGGAAATGTACATGTGCCGCGGCGGTGACGTGGTGGTGTTGCAAGGAGACATGTGGCGGAAGGTTTCGAAGGTACCGGGTGAGATTCGGAACGTTGCGAGCTTGGGAGTGTGGGAAGGGAGCTTGTTTGTTATTGGGTCGAGTGGGTTTGGGGAACCGCATATGGGCTTCGAGTTGGATCTGAAGAATGGGGCTTGGGCCAAAGTGGTGAGCCCGGAGGAGTACACGGGGCACGTGCAATCTAGTTGCCTTTTGGAAATCTAG 1083 0.5826 MELISGLPEDVARDCLIRVPYEQFAVVASVCKGWNSEIHSPEFHRRRRTAKHAQNILVTVQSKIDSEKARTGLLAKSSANPVYRLSVFEPKTGLWSELPLGPELTSGLPMFCQIAGVGYELVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDQNHMVYVAGGHDEEKNALKSALAYDVANDVWVSLPDMSRERDECKAVFRRGALCVVGGYCTEMQGRFERSAEVFDEATWRWAPVEEEFLDAAACPRTCVDGGNGAEGEMYMCRGGDVVVLQGDMWRKVSKVPGEIRNVASLGVWEGSLFVIGSSGFGEPHMGFELDLKNGAWAKVVSPEEYTGHVQSSCLLEI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00132 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Lapu5g00132 360 CDD F-box_AtAFR-like 3 47 - -
Lapu5g00132 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
Lapu5g00132 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Lapu5g00132 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Lapu5g00132 360 Pfam Kelch motif 169 205 IPR006652 GO:0005515
Lapu5g00132 360 Gene3D - 45 355 IPR015915 GO:0005515
Lapu5g00132 360 SUPERFAMILY F-box domain 3 54 IPR036047 GO:0005515
Lapu5g00132 360 SUPERFAMILY Kelch motif 79 322 IPR015915 GO:0005515
Lapu5g00132 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00132 Lapu-Chr5 1113581 1115135 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00132 - - vum:124828606 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00132 5 1113581 1115135 Lapu5g00132 5 1113581 1115135 ECH
Lapu5g00132 5 1113581 1115135 Lapu10g00585 10 8061849 8063531 PCT