Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00585 ATGGAGTTGATTTCGGGACTACCAGAGGACGTAGCACGGGACTGTTTGATTCGGGTTTCGTACCAGCAGTTTCCCACGGTGGCGTCAGTGTGCAAGCTCTGGAAATCAGAGATTCATTCGCCGGAGTACCACCGTCGACGGCGTTGCACGAAGCACGCGCAGAAGCTCATAGCGATGGTTCAGGCACGCGTCGAACCGGGAACTGGTTCCACCAAGCGCGTGACAAACCCGGTTTACCGTCTCAGCGTGTTCGAACCGGAAACGGGTCACTGGACCGAGCTGCCACCACCGCCTGAGTTTTATTCCGGGTTACCTATGTTCTGTCAGTTAGTGAGTGTCGGGTACGATCTTGTCGTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCATCGAATTCTGTGTTTGTGTACAATTTCTTGTCGGCGAAGTGGCGCCGCGCCGCGGAAATGCCGGGTGGGCCCCGCACCTTTTTCGCTTGCGCGTCGGATTCTAGGGGGACAGTTTTTGTCGCCGGAGGACACGATAACGAGAAGAACGCGCTGCGGTCGGCGCTGGCCTATGATGTTACCGCGGACCGATGGGTTTCGCTTCCCGACATGGCGGCGGAGCGCGACGAGTGCAAGGGAGTTTTCCGTCGCGGGAGGTTCGTCGCCGTCGGGGGCTACCCGACGGAGACCCAGGGAAGGTTCGGGAAGAGCGCGGAGGAGTTCGATCCTACCACGTGGCGCTGGGGCGAAGTGAAAGAGAACTTCCTGGATCGCGCCACGTGTCCGAGGACGTTTGCGGACGGTGGAGATGACGAGGCAGTGTTCTTGTGCAGCGGCGGGGACTTGATCTCCCTCCGCGGCGACACGTGGCAGAAGATGGCGACGGTGCCGGGAGAGATACGCAACGTGGCGTACGTGGGGAAGTTTGATGGGACGCTGGTGGTGATTGGATCTAGCGGCTACGGTGAAGTCCACGTGGCTTTTGCTTTCGATTTTGAGAGTTGCAATTGGAGGAAACTGGAGAGCCCAGAGGGGTTCACGGGCCATGTCCAAACCGGTTGTGTTTTGGAGATTTAG 1065 0.5878 MELISGLPEDVARDCLIRVSYQQFPTVASVCKLWKSEIHSPEYHRRRRCTKHAQKLIAMVQARVEPGTGSTKRVTNPVYRLSVFEPETGHWTELPPPPEFYSGLPMFCQLVSVGYDLVVLGGLDPNSWKASNSVFVYNFLSAKWRRAAEMPGGPRTFFACASDSRGTVFVAGGHDNEKNALRSALAYDVTADRWVSLPDMAAERDECKGVFRRGRFVAVGGYPTETQGRFGKSAEEFDPTTWRWGEVKENFLDRATCPRTFADGGDDEAVFLCSGGDLISLRGDTWQKMATVPGEIRNVAYVGKFDGTLVVIGSSGYGEVHVAFAFDFESCNWRKLESPEGFTGHVQTGCVLEI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00585 354 CDD F-box_AtAFR-like 3 47 - -
Lapu10g00585 354 Pfam F-box domain 4 45 IPR001810 GO:0005515
Lapu10g00585 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Lapu10g00585 354 SUPERFAMILY F-box domain 3 53 IPR036047 GO:0005515
Lapu10g00585 354 Pfam Kelch motif 105 155 - -
Lapu10g00585 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Lapu10g00585 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Lapu10g00585 354 Gene3D - 41 347 IPR015915 GO:0005515
Lapu10g00585 354 Pfam Kelch motif 165 200 IPR006652 GO:0005515
Lapu10g00585 354 SUPERFAMILY Kelch motif 76 338 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00585 Lapu-Chr10 8061849 8063531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g00585 7 294 Miscellaneous Gene Families AT4G33900 23.839 1.93e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00585 - - gmx:100796602 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00585 10 8061849 8063531 Lapu10g00585 10 8061849 8063531 ECH
Lapu5g00132 5 1113581 1115135 Lapu10g00585 10 8061849 8063531 PCT