Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00129 ATGGGCGCTTCTCTTCCTCCCAGAGAGGCTAACTTCTTCAAGCTTATTGTCAAATCCTATGAAACCAAACAATACAAAAAGGGCCTCAAAGCAGCAGATGCCATTTTGAAAAAATTCCCAGACCATGGAGAAACTTTATCAATGAAGGGGTTGACGTTGAATTGCATGGATCGTAAGTCTGAGGCATATGAATTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCAGACAGAGAATATAGGGAAGCTATAAAGTGCTATCGAAATGCATTGAAAATAGACCCTGACAATATTGAAATATTGCGTGACTTGTCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGGCAACAACTTCTGACACTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAGTGCATCAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACTTTGGAAGATGATTATCCTCCGGAAAATGAACGGTGTGAACATGGGGAAATGCTTTTGTATAAGATCTCCTTGTTGGAAGAATGTGGGTTTTTCCAGAAAGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCATATAAAGAACAGGAGGTATCACTTCTTGTCAAGCTTGGTCACCTAGAAGAAGGGGAGAAATTGTACCGGGCATTACTTTCCATGAATCCTGACAATTATAGATATTATGAAGGCCTGCAAAAATGTGTTGGATTGTATTCAGAAAATGGCCATTTTTCCCCTGGTGAAATAGATCAGTTAGACGCCTTGTACAAAACACTTGAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTTTACAAGGTGACAAATTTCGAGAAGCAGCAGATAGTTATATTAAGCCTCTCCTAACTAAGGGAGTTCCATCTCTTTTCTCGGATCTTTCTTCATTATACAATCAATCTAGGAAGGCAGACGTTTTGGAACAAATCGTTCTTGAGTTAGAGAGTTCACTTAAGTCTACTGGTCAGTACCCTGGATGGATGGAAAAAGAGCCACCTTCAACTCTGATGTGGACTTTGTTCTTCTTGGCTCAGCATTATGACAGACGTGGCCAGTATGAAATTGCTCTTTCTAAAATTGACGAGGCTATTCATCACACACCTACTGTCATTGATCTGTATTCGGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGATGTATGGATCTTGCCGATCGTTATGTGAATAGTGAATGTGTTAAGCGCATGCTGCAGGCTGATCAGGTTGCTTTGGCAGAAAAAACTGCTGTATTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGTTATTTCCGCCAAGGTGATCTTGGACTGGCCCTAAAGAAATTTCTAGCTGTGGAGAAGCATTATGCTGATATTACAGAGGATCAATTTGATTTTCATTCATACTGCATAAGGAAAATGACATTGCGTCCATACGTGGAAATGCTTAAATTTCAAGATCAATTGCATTCACATGCGTACTTTCGGAAAGCGGCTGCTGGAGCTATCAGATGTTATATTAAATTGCATGATTCTCCTCCAAAGTCGACAGCTGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAGAAAAAGAAAATTAGGCAAAAACAAAGGAAGGCAGAAGCTAGAGCTAAGAAAGAGGCAGAAGAAAAAAATGAATCAAGTGCTGTTGGGGTATCAAAGTCTGGGAAACGGCATGCAAAACCTGTTGATTCAGATCCACGTGGTGAAAAATTGATGCAGGTTGAAGATCCATTGTTAGAAGCCATAAAATACTTGAAGCTGCTTCAGAAGAATTCACCTGACTCATTCGAGACACACTTTCTCTCTTTTGAGTTATATATGAGAAAACAGAAAATTTTACTTGCCTTCCAGGCTGTTAAGCAGTTACTGAGGTTGGATGCTGAACATCCTGATACTCATCGTTGTCTGGTTAAATTCTTCAATAAAGTGGGATCCATGAACGCTCCTGTGACTGACAGTGAGAAACTTGTGTGGAGTGTCTTAGAAGCTGAGCGCCAAACTATTAGTCAGCTGCATGGGAAATCTCTGTTTGAGACAAATAATTCTTTCCTTGAAAAGCATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGAGAAATGTTGTACGTTTTGGATCCCGTCAGAAGGCCTGAGGCTGTCAAGTTGATTGAAGGGTCAACAAATAACCTTGTGCCAAGAAATGGTGTGCTTGGACCGATCGGGAAATGGAAACTTAAAGATTGTATTGCAGTTCATAAGCTTCTTGGAACAGTTCTTGTTGATGAGGATGCTGCATTAAGATGGAAAGTGCGTTGTGCCAAGTTTTTCCCATACTCCACCTACTTTGAGGGCAATCGTAGCTCTTCCTTCAGTCAGATAGGCAAGAGCACTGAAAATGGGACTTCTAACCACGTGGAATCCTCCCCATCAAATGGGAAACTGGAGGCATTTAAAGATCTCACCGTCTGA 2670 0.4094 MGASLPPREANFFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSSASKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGFFQKALEELQKKELKIVDKLAYKEQEVSLLVKLGHLEEGEKLYRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPGEIDQLDALYKTLEQQYKWSSAVKRIPLDFLQGDKFREAADSYIKPLLTKGVPSLFSDLSSLYNQSRKADVLEQIVLELESSLKSTGQYPGWMEKEPPSTLMWTLFFLAQHYDRRGQYEIALSKIDEAIHHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYADITEDQFDFHSYCIRKMTLRPYVEMLKFQDQLHSHAYFRKAAAGAIRCYIKLHDSPPKSTAEEDNDMSKLLPSQKKKIRQKQRKAEARAKKEAEEKNESSAVGVSKSGKRHAKPVDSDPRGEKLMQVEDPLLEAIKYLKLLQKNSPDSFETHFLSFELYMRKQKILLAFQAVKQLLRLDAEHPDTHRCLVKFFNKVGSMNAPVTDSEKLVWSVLEAERQTISQLHGKSLFETNNSFLEKHEDSLMHRAAFGEMLYVLDPVRRPEAVKLIEGSTNNLVPRNGVLGPIGKWKLKDCIAVHKLLGTVLVDEDAALRWKVRCAKFFPYSTYFEGNRSSSFSQIGKSTENGTSNHVESSPSNGKLEAFKDLTV* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00129 889 Pfam TPR repeat 84 123 - -
Lapu5g00129 889 SUPERFAMILY TPR-like 60 273 IPR011990 GO:0005515
Lapu5g00129 889 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Lapu5g00129 889 SMART tpr_5 43 76 IPR019734 GO:0005515
Lapu5g00129 889 SMART tpr_5 380 413 IPR019734 GO:0005515
Lapu5g00129 889 SMART tpr_5 77 110 IPR019734 GO:0005515
Lapu5g00129 889 MobiDBLite consensus disorder prediction 577 594 - -
Lapu5g00129 889 Gene3D - 505 724 - -
Lapu5g00129 889 MobiDBLite consensus disorder prediction 859 879 - -
Lapu5g00129 889 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lapu5g00129 889 Coils Coil 596 620 - -
Lapu5g00129 889 MobiDBLite consensus disorder prediction 606 620 - -
Lapu5g00129 889 MobiDBLite consensus disorder prediction 859 877 - -
Lapu5g00129 889 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Lapu5g00129 889 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Lapu5g00129 889 Gene3D - 2 503 - -
Lapu5g00129 889 MobiDBLite consensus disorder prediction 577 642 - -
Lapu5g00129 889 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 724 - -
Lapu5g00129 889 PIRSF NAT_A 1 817 IPR021183 -
Lapu5g00129 889 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 695 IPR021183 -
Lapu5g00129 889 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00129 Lapu-Chr5 1079516 1095375 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00129 K20792 - gmx:100776968 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00129 5 1079516 1095375 Lapu5g00129 5 1079516 1095375 ECH
Lapu5g00129 5 1079516 1095375 Lapu10g00586 10 8079988 8096541 PCT