Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g00586 ATGGGCGCTTCTCTGCCCTCCAAGGAGGCCAACCTCTTCAAGCTTATTGTCAAATCATATGAAACCAAACAATATAAAAAGGGCCTCAAAGCTGCTGATGCCATTTTGAAAAAATTTCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAGGGATTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGATCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAAAATTGATCCTGACAATATTGAAATTCTTCGTGACCTATCGCTGCTACAGGCACAAATGCGAGATTTAACAGGCTTTGTTGAGACTAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAATTGGATTGGATTTTCTGTTGCCCATCATTTGAACTCCAATGCATCCAAAGCAGTTGAAATTTTGGAAGCGTATGAAGGGACTTTGGAAGAGGATTATCCTCCAGAGAATGAACGGTGTGAGCATGGGGAAATGCTTTTGTACAAGATCACGTTGTTAGAGGAATGCGGGTTTCTTGAGAGAGCTCTTGAGGAGTTGCACAAAAAAGAATTTAAAATTGTTGACAAGCTTGCATACAAAGAACAGGAGGTGTCACTTTTAGTAAAGCTTGGTCACTTAGAAGAAGGCGAAGCTTTGTACCGAGCATTACTTTCCATGAATCCTGATAATTATAGATACTATGAAGGACTTCAAAAGTGTCTTGGGCTTTATTTAGAAGATGGGCAGTACTCGCCTGATCAAATAGATCAGTTAGATTCCTTGTACAAAACACTTGTACAACAATACAAGTGGTCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTTCAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTTCCCTCTCTATTCTCTGATCTATCATCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTCGAGTTTGAGCAGTCAATTAGGATGTCAGGCCAATATCCTGGAAGAATTGACAAAGAACCCCCTTCAACTCTTATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGGGGTCAATTTGAAATTGCCCTTTCTAAAATTGATGAAGCTATAGAACATACACCTACAGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAGTGTGTTAAGCGGATGCTGCAGGCTGATCAGGTGTCTTTGGCCGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCAGGTGAAAGCTATTTCCGCCAGGATGATCTTGGACGGGCACTCAAAAAATTTTTAGCAGTGGAGAAGCATTATGCTGATATCACGGAGGACCAATTTGATTTTCATTCATACTGCTTACGGAAAATGACTTTGCGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCACTCACATTCATATTTTCACAAAGCAGCAGCTGGGGCTATAAGATGCTATATAAAGTTGCATGATTCTCCCCCAAAGTCTACAGCAGAAGAAGATGATAATATGTCAAAGTTGCCTCCTTCTCAGAAGAAGAAAATGAGGCAAAAGCAGAGGAAGGCAGAAGCAAGAGCCAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTCAAGTGCAAGTGGTGTATCGAAGTCTGGGAAGCGGCATGTAAAACCTGTTGATCCTGATCCAAACGGGGAGAAGTTGTTGCAGGTTGAAGATCCACTGTCCGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACACACTTGCTCTCTTTTGAATTATATACAAGGAAACAAAAGACTTTGCTTGCCTTTCAGGCTGTGAAGCAGTTACTGAGATTGGACTCTGAACATCCTGATTCTCATCGTTGCTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAGCTGATTTGGAGTGTCTTAGATGCTGAGCGCCCAAATATTAGCCAGGTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCTTTCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCAGCTTTTGTAGAAATATTGCACATTTTGGATTCGAACAGAAAATTTGAGGCTGTTGAGTTCATAGAAGAGTCGACAAACAACATTGTGCCCAGAAATGGAGCGCTTGGACCAATCAAGGAATGGAAACTTAGAGACTGTATTGCGGTTCACAGTCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAGGTGCGGTGTGCGGATTACTTTCCATATTCTACGTACTTCGAGGGAAGACACAGCTCTGCCTCTCCCAACTCGGCCTTCAACCAGTTACGTAAGAACTCTGAAAATGAGAGTAACCACATCACATCAAACGGGAAACTAGAGGCATTTAAAGATCTCACTATCTGA 2676 0.4118 MGASLPSKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDYPPENERCEHGEMLLYKITLLEECGFLERALEELHKKEFKIVDKLAYKEQEVSLLVKLGHLEEGEALYRALLSMNPDNYRYYEGLQKCLGLYLEDGQYSPDQIDQLDSLYKTLVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILEFEQSIRMSGQYPGRIDKEPPSTLMWTLFLLAQHYDRRGQFEIALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVSLAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQDDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHSYFHKAAAGAIRCYIKLHDSPPKSTAEEDDNMSKLPPSQKKKMRQKQRKAEARAKKEAEEKNEESSASGVSKSGKRHVKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKTLLAFQAVKQLLRLDSEHPDSHRCLIKFFHKVGSMNAPVTDSEKLIWSVLDAERPNISQVHEKSLFEANNSFLEKHKDSLMHRAAFVEILHILDSNRKFEAVEFIEESTNNIVPRNGALGPIKEWKLRDCIAVHSLLGTVLADQDAALRWKVRCADYFPYSTYFEGRHSSASPNSAFNQLRKNSENESNHITSNGKLEAFKDLTI* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g00586 891 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Lapu10g00586 891 SUPERFAMILY TPR-like 17 260 IPR011990 GO:0005515
Lapu10g00586 891 MobiDBLite consensus disorder prediction 577 646 - -
Lapu10g00586 891 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lapu10g00586 891 SUPERFAMILY TPR-like 384 721 IPR011990 GO:0005515
Lapu10g00586 891 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Lapu10g00586 891 MobiDBLite consensus disorder prediction 606 622 - -
Lapu10g00586 891 Coils Coil 596 620 - -
Lapu10g00586 891 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Lapu10g00586 891 SMART tpr_5 43 76 IPR019734 GO:0005515
Lapu10g00586 891 SMART tpr_5 77 110 IPR019734 GO:0005515
Lapu10g00586 891 SMART tpr_5 380 413 IPR019734 GO:0005515
Lapu10g00586 891 Gene3D - 505 725 - -
Lapu10g00586 891 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Lapu10g00586 891 Gene3D - 2 503 - -
Lapu10g00586 891 MobiDBLite consensus disorder prediction 577 593 - -
Lapu10g00586 891 PIRSF NAT_A 1 818 IPR021183 -
Lapu10g00586 891 MobiDBLite consensus disorder prediction 854 877 - -
Lapu10g00586 891 Pfam TPR repeat 84 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g00586 Lapu-Chr10 8079988 8096541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g00586 K20792 - gmx:100820094 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00586 10 8079988 8096541 Lapu10g00586 10 8079988 8096541 ECH
Lapu5g00129 5 1079516 1095375 Lapu10g00586 10 8079988 8096541 PCT