Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00649 ATGGAGACACCATTAGTGGTCCAAAAGTTTAGTTCAGAATCTGACTATTTGGCTGTGAAAAGGTTGAAGGATGTTAAATTTGTTTTGTGGACAGAGACTGTGAAGATGTCGAGGATTGCATTCCCTGTGGCATTGACCCATCTGTTTCAGTTCCTCACAAACTCCTCAACTTCCATCTATGCTGGTCATCTTGGGGACATTGAACTCTCCTCTATCTCTGTTAACCAAGGTGTCATCAGTTCCATCCCTTTTTACTTGCTGTTTGGTATGTCATCTGCACTGGCAACACTTTGTGGCCAAGCTTTTGGAGCAGGGCAAATTCAATCTACTTGTGTTTATGTTCAAAGATCATGGATTATACTCACCATCACTTGTATAATCCTCTTGCCTATTCCTATATATGCCGCACCAATCTTAAAGTTGCTAGGCCAAGATGAAGGAATAGCTGATCTTGCTGGCACATATTCTATACAAGTGATCCCCTACATGTTTTCCTTTGCTATAGTTTTTCCCACCCTGAGATTTCTTCAGTCCCAGAGCAAGGTTAAAGTTATTATGTGCATAGCATTTCTGGTTTTGCTCATACAAAATGGGTTGCTTTACATGTTCATAAATGTATTTGGTTGGGGTACAACTGGCTTAGCCATGGTGAGTAACATCATAGGGTGGATATATGCTGTGGCTTTGGTTGTGTATACTATTGGATGGAGCAAGGGAGAATGGAATGGATTTTCTTGGATGGCATTTGGGGATTTATGGCCATTTGCTAAGTTAAGCCTTGCATCATCTGTCATGATTTGCTTAGAGCAATGGTATCTTACAGCCATTATGCTCCTTGTTGGTCTACTAGACAATCCTGTGATTTCTGTTGGTTCCTATTCTATCTGCTTCAATGTTCAGGGTTGGCACGGTACTCTGCTCCTTGGAATAAACACAGCCATAAGTGTTCGTGTCTCCAACACGCTTGGCATGTCACATCCAAGAGCAGCAAAATACTCTTACTATGTCACCATGTTGCAGTCTCTCCTCCTTGGTATTCTTTTCATGACAGTTATTTTTTTCACTAAAGAAGATTTCGCCACCATCTTTACCAACAGTGAGGATATGATACTAGCTGTTGCTGATTTAGCATACCTTCTTGGTACAACAATGTTTCTCAATAGCATATCACAGGTTATGTCAGGTGTGGCCATTGGAAGTGGATGGCAAGTGATGGTTGCTTACATAAACCTAGCATGTTATTACATTGTTGGCCTCCCAATTGGAATTTTCCTTGGTTTCAAGCAGCATTTAGGGGTCAAGGGTGTCTGGGGAGGCACAATGTGTGGCAGTATTCTGCAGATCTTAGTCCTCTTACTGATTATTTGGAAGACCAATTGGACCAAGGAGGTGGAGCAAACAGCTCATCGCATGCGAATATGGAACATCCACAAGCACAACTCAGACGTTACAGAAAATGTTACATGA 1467 0.4172 METPLVVQKFSSESDYLAVKRLKDVKFVLWTETVKMSRIAFPVALTHLFQFLTNSSTSIYAGHLGDIELSSISVNQGVISSIPFYLLFGMSSALATLCGQAFGAGQIQSTCVYVQRSWIILTITCIILLPIPIYAAPILKLLGQDEGIADLAGTYSIQVIPYMFSFAIVFPTLRFLQSQSKVKVIMCIAFLVLLIQNGLLYMFINVFGWGTTGLAMVSNIIGWIYAVALVVYTIGWSKGEWNGFSWMAFGDLWPFAKLSLASSVMICLEQWYLTAIMLLVGLLDNPVISVGSYSICFNVQGWHGTLLLGINTAISVRVSNTLGMSHPRAAKYSYYVTMLQSLLLGILFMTVIFFTKEDFATIFTNSEDMILAVADLAYLLGTTMFLNSISQVMSGVAIGSGWQVMVAYINLACYYIVGLPIGIFLGFKQHLGVKGVWGGTMCGSILQILVLLLIIWKTNWTKEVEQTAHRMRIWNIHKHNSDVTENVT* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00649 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 28 460 - -
Lapu4g00649 488 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lapu4g00649 488 Pfam MatE 42 197 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lapu4g00649 488 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
Lapu4g00649 488 NCBIfam MATE family efflux transporter 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00649 Lapu-Chr4 7946671 7949764 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00649 K03327 - gmx:100817098 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00649 4 7946671 7949764 Lapu4g00649 4 7946671 7949764 ECH
Lapu4g00649 4 7946671 7949764 Lapu7g02019 7 36415814 36420465 PCT