Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00191 ATGGCGTTTCCCAACACTTGTAAACTCTCAGAATTTTCTCTCAGTTCATCCTTCTCATCACTCAATCCTCATCCTCCCCCTTCTTCTCGCTCTTTCCACAAATTCTTATTTCGCACACTCACCTTCGCTTCTCTCCCAACCCCTAAACCCAACGTGTCTGCACCCTGGCTCACCAAATCCCCCTCTCCCAAAAGGGTCACCGAACCCCTCACTGCCGACGACCCAATTCCCCGCACAACGCCAAAACAACCGCAGAACGCCGTCGAGAGAATCGTCCTTCGGTTACGCAACTTGGGCTTGCCTTCTGAAGAAGAACAACAAGAAGAACAACAGGAAGAAGTTCCGGCAAGTAATCCGGTGCCGGTGACCGGAGATGAGAGGCTGAGCGAGTTGCTCCGGCGGGAGTGGGTGCGGCCGGACTCCAGGCTCGTGGGCGAGGATGGGGAGGAGGAGATGATGCTGCCGTGGGAGAGAGAGGAGGAGAAGGTGGTGGTGGTTGGGGGTGGAAGGGATGCAGAGGGGCTGAAGAAGAGGAGGGTTACGGCTCCGAGTTTGGCTGATTTGACCCTTGAGGATGAGTTGCTGAGGAGGTTGAGGAGAGAGGGGATGCGTGTGAGGGAGAGGGTGAGTGTCCCCAAGGCTGGACTCACTCAGGAGGTGATGGAAAAGATTCATAAGAGGTGGATGAAGGAGGAATTGGTGAGGCTCAAGTTTCATGAGGAACTTGCAAAGGACATGCGGAAGGCTCATGAGATTGTCGAGCGTCGAACCGGAGGATTGGTTACATGGAGGTCAGGGAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCCCGACACAAGGAAGGAAGTTAATGACAAGAAAAGTAATGACTTTTTTGTCCCAGATGTTTCATCGGGAAGTTTGTTGAAAAGTGAAGTAAGTAATGCAGCCTCGTCTCTGGAAAAGAGTGAGGTGGTTGTGAGGGAACAAGAACAGTCTAAGAATGTGACAGAAGCGGAAGCAGAGTACAATGCTCTTCTTGATGAACTAGGTCCCCGTTTTGTTGGATGGTGGGGTACAGGGATACTTCCTGTTGACGCTGATTTACTTCCACGAATAGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCAACAGGAATGCGTTCTCGGCTGACAAATGCAGAGATGACCAATTTAAGGAAGCTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTAGCATGTGCTATTCTTAAGCTTTGGGAGAAAAGTTTGGTTGCAAAGATTGCTGTCAAACCTGGGATCCAGAATACAAACAATGAACTGATGTCAGAGGAGCTGAAGGTGTTAACGGGAGGTACCTTGCTGCTAAGGAATAAATATTTCATTGTTATATACCGTGGGAAAGACTTTGTTCCAACAAGTGTGGCCGCTGTGTTAGCTGAAAGAGAGGAAATGACAAAGCAAGTACAGGATGTTGAAGACAAGTTCCGATGCAGAGCAGTTGATGCAATTCCATCAGGGAAAGGTGAAGCATCAGCACAGGCTGGCACTTTAGCAGAGTTCTACGAGGCTCAGGCTCGATGGGGAAGGGAAATATCTCCCGGAGAACGTGAGAAGATGGTGGAAGAAGCTGCCAAAGCCAGGACTGCTAAGCTTGTCAGAAAAATTGAACATAAACTATTTTTAGCCCAGACCAAAAAGCATAGAGCAGAAAAGCTCTTAGCTAAAATAGAATCATCGATGGTTCCAGCTGGTCCTGATTATGATCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAACCATACTTGCCCCTTGGTATACGGGGAGTTTTTGATGGTGTCGTTGAGAATATGCATTTGCATTGGAAATATCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTGGAAGACACAGCAAGGTTACTTGAATATGAGAGTGGTGGAATACTAGTTGCAATAGAAAAAGTTTCCAAAGAATTTGCTCTTATTTTCTATCGAGGAAAGAATTATACTCGGCCTATTACTCTGAGGCCAAGAAACCTTCTAACAAAGGGAAAGGCATTAAAGCGACATGTAGCCATGCAACGTCACGAGGCTTTGAGTCAGCATATCACTGAACTGGAAAAAACTATAGAACAATTGAAAAAAGAACTTGATAAGCCTCAAGATTTAGATGCTGGAGATGGGGCGAGCACAGAGGAAGAGGATCATGACGAAATAGACAACATCTCAGATTTGACCCTAAGTGAGAATGAAGATTCTGATGGTTTTGATGATGAGGAAGAAAGTGACTGGGTAGATGACGAGGAAGAAAGTGATTGGGAAGATGATGAGGACCCGGGTTTTCAAAATTCATAA 2418 0.4615 MAFPNTCKLSEFSLSSSFSSLNPHPPPSSRSFHKFLFRTLTFASLPTPKPNVSAPWLTKSPSPKRVTEPLTADDPIPRTTPKQPQNAVERIVLRLRNLGLPSEEEQQEEQQEEVPASNPVPVTGDERLSELLRREWVRPDSRLVGEDGEEEMMLPWEREEEKVVVVGGGRDAEGLKKRRVTAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWMKEELVRLKFHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDTRKEVNDKKSNDFFVPDVSSGSLLKSEVSNAASSLEKSEVVVREQEQSKNVTEAEAEYNALLDELGPRFVGWWGTGILPVDADLLPRIVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKPGIQNTNNELMSEELKVLTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREEMTKQVQDVEDKFRCRAVDAIPSGKGEASAQAGTLAEFYEAQARWGREISPGEREKMVEEAAKARTAKLVRKIEHKLFLAQTKKHRAEKLLAKIESSMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKYRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIFYRGKNYTRPITLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQLKKELDKPQDLDAGDGASTEEEDHDEIDNISDLTLSENEDSDGFDDEEESDWVDDEEESDWEDDEDPGFQNS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00191 805 FunFam CRM-domain containing factor CFM3B, chloroplastic 598 700 - -
Lapu4g00191 805 MobiDBLite consensus disorder prediction 48 88 - -
Lapu4g00191 805 SUPERFAMILY YhbY-like 189 280 IPR035920 -
Lapu4g00191 805 MobiDBLite consensus disorder prediction 102 124 - -
Lapu4g00191 805 Gene3D - 598 704 IPR035920 -
Lapu4g00191 805 Gene3D - 387 480 IPR035920 -
Lapu4g00191 805 Gene3D - 188 290 IPR035920 -
Lapu4g00191 805 MobiDBLite consensus disorder prediction 748 805 - -
Lapu4g00191 805 ProSiteProfiles CRM domain profile. 188 284 IPR001890 GO:0003723
Lapu4g00191 805 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 36 781 IPR045278 GO:0000375|GO:0003729
Lapu4g00191 805 FunFam CRS2-associated factor 1, chloroplastic 387 483 - -
Lapu4g00191 805 Coils Coil 481 501 - -
Lapu4g00191 805 ProSiteProfiles CRM domain profile. 386 483 IPR001890 GO:0003723
Lapu4g00191 805 FunFam CRS2-associated factor 1, chloroplastic 189 284 - -
Lapu4g00191 805 Pfam CRS1 / YhbY (CRM) domain 388 472 IPR001890 GO:0003723
Lapu4g00191 805 Pfam CRS1 / YhbY (CRM) domain 191 273 IPR001890 GO:0003723
Lapu4g00191 805 Pfam CRS1 / YhbY (CRM) domain 600 686 IPR001890 GO:0003723
Lapu4g00191 805 Coils Coil 236 256 - -
Lapu4g00191 805 SUPERFAMILY YhbY-like 388 479 IPR035920 -
Lapu4g00191 805 Coils Coil 717 744 - -
Lapu4g00191 805 Coils Coil 325 345 - -
Lapu4g00191 805 MobiDBLite consensus disorder prediction 738 805 - -
Lapu4g00191 805 SUPERFAMILY YhbY-like 598 696 IPR035920 -
Lapu4g00191 805 SMART CRS1_YhbY_2 388 472 IPR001890 GO:0003723
Lapu4g00191 805 SMART CRS1_YhbY_2 190 273 IPR001890 GO:0003723
Lapu4g00191 805 SMART CRS1_YhbY_2 599 686 IPR001890 GO:0003723
Lapu4g00191 805 ProSiteProfiles CRM domain profile. 597 697 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00191 Lapu-Chr4 1897590 1904515 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00191 - - gmx:100788177 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00191 4 1897590 1904515 Lapu4g00191 4 1897590 1904515 ECH
Lapu3g03835 3 61885752 61900479 Lapu4g00191 4 1897590 1904515 PCT