Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03835 ATGAGTAGTACAAGTAGTACGAAAAGGTTCAATCCTATTCATCTTCAAGAGGCCGCAGTGGACTTGTTAAACCATGTGCTAAAGGTGAAGGAGACGAAGGGCTGGATTTCACTCCTCTTTCCACTGATTTTCATTGTTTGGGCTATTCACAGATGGCTATTTCCTTTCTCCAATTGGCTTTCCCTTGCCCTTGCTCTATGGGCATCTATGCAATATGGGAAGTATCAGCGCAAACTACTGGAGGAAGACTTGAATAAGAAATGGAATCGAATCCTACTCAATACCTCGCTAGTCACACCGTTGGAACACTGCGACTGGTTGAATCTGCTGTTGACACAAATTTGGTCCAACTATTTTAACCCCAAGTTCTCAAGAAGATTATCAGCCATTGTTGAGAAACGTTTAAAGCTCCGAAAACCAAGATTTATCGAAAAAGTTGAGGTGCAAGAGTTTTCACTGGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGATCAGCGAGTCCTGAAATTGAGTTTTGATTGGGACACGAGCGAGATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACAGCCAGAATTGTGATTAACAATCTTCATATCAAGGGTGAGCTTCTGGTGACTCCAATTCTAGATGGAAATGCACTTTTGTATTCATTTTCATCCACACCTGAGGTGAGAATAGGAATTGCCTTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCTGGGGTTTCTCCATGGCTGGATAAACTTTTTACTGATACGTTGGTTAAAACCATGGTGGAACCTCGACGCCGTTGTTTCAGTTTGCCTGTGGTTGATTTGAGGAAAACTGCCGTTGGAGGTATAATATATGTGTCAGTGATATCAGCAAACAAACTTTCTTGGAGTAACTTCAAGAGTAGCCGATCATTGAGGCCACAGAATAGCACAAGCAATGGATGTTCAGAAAGCAACCTGGATGACAAGGACCTACAGACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGTCATGGTTCAAATCCAACGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGTATTGTTCGCTTCAATCTTTATGAGCGTCCCTCTAGCGGTATGAGGCATGTTGAAGACGATTCAACAATAATGTGGGCAATAGGACCTGATTCTAGTGCAATAGCAAAACATGCAAAGTTTTGCGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGTACCAACTCAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCACTTTTCTGATGGTTCACATAGCTTGAACAACCTCCGTTCTAATTCTCAGCGATCACTCATTGGATCATCAGCGCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACAATTGTAGAAGCAAAGGATCTCGTTACAAAAGACAAATCTGGAAAAGTTAGCCCATACGTTAAATTGCAATATGGAAAGGTTGGCAAGAGAACGAAGGTTGCTCCTTCTACTACTACTACTACAAATCCTGCCTGGAATGAATCATTTGATTTTGATGAGAATGATGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGAGATGAAAATATTGGTACTGCAAATGTAAATTTGGAAGGACTGGGCGACGGGTCAATTAAGGATGAATGGATCCCACTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTAGTTAGGGTGGAGGACCAAGAAGGATCAAGGGGTTCACCCAATGGTTGGATAGAACTTGTTGTTATTGAAGCAAGAGATCTTATTGCTGCCGATCTGCGAGGGACAAGTGATCCTTATGTGAGGGTGAACTATGGAAACTCGAAGCTGAGAACAAAGGTTATACACAAAACTCTGAACCCTCGTTGGAACCAAACCTTAGAGTTCCTTGACGATGGCAGTCCCCTGACATTGCATGTTAGGGACCACAATGCTTTACTACCCACATCAAGTATAGGGGAATGTGTTGTAGAGTATCAAAGGTTGCCTCCAAACCAAATGTCTGACAAATGGATACCTCTCCAAGGCGTGAAAAGTGGCGAGATACACATCCAAATTACAAGAAAAGTTCCAGAGATGCAAACAAGAAGTTCTCTAAACTCTCAACCATCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGACATGTTGAAAAAGTTTCGATCATTAATAGAGGATGGAAATCTTGAAGGATTAACAACAACTTTGAGTGAGCTAGAGAGTCTAGAGGATACAATGGAAGGGTACGTAGCACAGCTGGAGACTGAGCAAATGCTTCTTCTCAGCAAAATAAATGAACTGGTAGGAATTTGCATTCGTGTATGCGCTCTCAACACCTTCTCCTCTCTCCCAACCACTCGCCACGACGACCACGACGATTTGTTCGCCCCTGTTCCCACTCCCCGCCACGTCGACAAAGTCACCAACGCCATCGAGAGAATCGCCCTACGCTTGCGCAACTTAGGGTTAGCATCCGCCGACCTCGCCGACGACGACGATTTCCTGCGCCGCGAATGGCTTCGTCCCGACGAGGCGCTTTTGCCTTGGGACAAGCAAGAAGAGGACGAGTACGAGGAGCACGAGGAAAAGCAGAAGGAGAAACTAAAGAAGAAGAGTGTTGGTGCAGCGACACTGGCGGAGCAAACGCTGAAGGAGGAGGAGCTGCGGCGGTTGCGAACCCTGGGAATGAGTCTCAAGGAGAAGGTCACTATCCCCAAAGCTGGCCTGACGCGAGCCGTGCTCGACAAGATTCACCGTCAGTGGAGCAACTGCGAGTTGGTGAGGCTCAAGTTTCACGAGCTTCTTGCTCAGAACATGAAGTTGGCTCATCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCGGGGAGTTATATGTGGGTGTACCGAGGTAGGAATTATCAAGGGCCTATGCAACTAAATGAAAAGGAAGGAGATGATCAAATTCCTGTGCCGGAGGATGGTGATGCATCTCTGTTGCTGGAAAAGAGTGAGGCAGTTTTCTGGAAGGAGGAGAACATGACGCCAGAGGAAGTGGAGTTTAACAGGATGCTTGATGGCTTCGGTCCTCGTTTTGTTGAATGGTGGGGCACCGGAATACTTCCAATTGATGCTGATTTGCTTCCCCCCACAGTTCCTGGTTACAAAACGCCTCTTAGGCTTCTTCCTGCTGGAATGCGTCCACGACTGACCAATGATGAACTCACGAATATGCGGAAACTTGCAAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTTTGGGAGAAAAGTTTAGTTGCAAAGATTGGAGTCAAGCGTGGTATTGTGAATACAAACAATGAACTGATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACTTTACTTCTGCGGAACAAATATTACATTGTAATATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGATGTTATTGCTGAAAGACAGGAAATGACAAAACATGTGCAGGATGTTGAGGAGAAGGTGCGGTGCAAAGTTCATGTCATAGCTCCATCAAGGGAAGATGAATCAAAAGCACAAGCAGGATCATTGACTGAGTTCTATGAGGCTCAGGCAAGCTGGGGAAGGGATATATCTACTGAAGAACGTGAGAGGATGAGGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGCTTGCCAAAAAAATTGAATCTAAACTAGCAGTGGCCCAAGGCAAAAGGCTTAGAGCAGAAAAGTTATTGGCGAAAATAGAAGCATCTTTGGTTCCAGTTGGTCCTGATCATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAGGCATACTTGCCACTTGGTATACGCGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCACTGGAAGCATCGAGAACTTGTTAAATTAATAACGAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTACTGGAATATGAGAGTGGTGGAATACTAGTAGCAATAGATAAAGTTCCTAAAGGATATTCTCTTATTTACTATCGTGGAAAAAATTATAGGCGACCTATGACTCTAAGGCCTAGAAACCTTCTAACAAAGGCAAAGGCACTGCAGCGTTCAATAGCCATGCAACGGCATGAGGTTCCAATCTTTTTTTTTTTTGAAAATTACAAATCTGTTTTTTCTCATTTTGTATTTATATCATTTGATCATTTGTAA 4362 0.436 MSSTSSTKRFNPIHLQEAAVDLLNHVLKVKETKGWISLLFPLIFIVWAIHRWLFPFSNWLSLALALWASMQYGKYQRKLLEEDLNKKWNRILLNTSLVTPLEHCDWLNLLLTQIWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKLSFDWDTSEMSILMLAKLSVGTARIVINNLHIKGELLVTPILDGNALLYSFSSTPEVRIGIAFGSGASQSATELPGVSPWLDKLFTDTLVKTMVEPRRRCFSLPVVDLRKTAVGGIIYVSVISANKLSWSNFKSSRSLRPQNSTSNGCSESNLDDKDLQTFVEVEVEELTRRTGLSHGSNPTWDTTFNMVLHDNTGIVRFNLYERPSSGMRHVEDDSTIMWAIGPDSSAIAKHAKFCGDEVEMVVPFEGTNSAELKVKIVVKEWHFSDGSHSLNNLRSNSQRSLIGSSALLSKTGRKLKITIVEAKDLVTKDKSGKVSPYVKLQYGKVGKRTKVAPSTTTTTNPAWNESFDFDENDGDEYLNVKCFSEEIFGDENIGTANVNLEGLGDGSIKDEWIPLEGVSSGELRLKIEVVVRVEDQEGSRGSPNGWIELVVIEARDLIAADLRGTSDPYVRVNYGNSKLRTKVIHKTLNPRWNQTLEFLDDGSPLTLHVRDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRSSLNSQPSSLSKSHQIPTQMRDMLKKFRSLIEDGNLEGLTTTLSELESLEDTMEGYVAQLETEQMLLLSKINELVGICIRVCALNTFSSLPTTRHDDHDDLFAPVPTPRHVDKVTNAIERIALRLRNLGLASADLADDDDFLRREWLRPDEALLPWDKQEEDEYEEHEEKQKEKLKKKSVGAATLAEQTLKEEELRRLRTLGMSLKEKVTIPKAGLTRAVLDKIHRQWSNCELVRLKFHELLAQNMKLAHQIVECRTRGLVIWRSGSYMWVYRGRNYQGPMQLNEKEGDDQIPVPEDGDASLLLEKSEAVFWKEENMTPEEVEFNRMLDGFGPRFVEWWGTGILPIDADLLPPTVPGYKTPLRLLPAGMRPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVADVIAERQEMTKHVQDVEEKVRCKVHVIAPSREDESKAQAGSLTEFYEAQASWGRDISTEERERMRQEVAKAKNAKLAKKIESKLAVAQGKRLRAEKLLAKIEASLVPVGPDHDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGYSLIYYRGKNYRRPMTLRPRNLLTKAKALQRSIAMQRHEVPIFFFFENYKSVFSHFVFISFDHL* 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03835 1453 Pfam CRS1 / YhbY (CRM) domain 915 998 IPR001890 GO:0003723
Lapu3g03835 1453 Pfam CRS1 / YhbY (CRM) domain 1098 1182 IPR001890 GO:0003723
Lapu3g03835 1453 Pfam CRS1 / YhbY (CRM) domain 1310 1396 IPR001890 GO:0003723
Lapu3g03835 1453 SUPERFAMILY YhbY-like 914 1007 IPR035920 -
Lapu3g03835 1453 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 601 716 IPR035892 -
Lapu3g03835 1453 Gene3D - 914 1013 IPR035920 -
Lapu3g03835 1453 Gene3D - 1308 1407 IPR035920 -
Lapu3g03835 1453 Gene3D - 1097 1191 IPR035920 -
Lapu3g03835 1453 PANTHER OS01G0128800 PROTEIN 16 802 - -
Lapu3g03835 1453 FunFam CRS2-associated factor 1, chloroplastic 1097 1193 - -
Lapu3g03835 1453 Gene3D C2 domain 463 590 IPR035892 -
Lapu3g03835 1453 Gene3D C2 domain 591 718 IPR035892 -
Lapu3g03835 1453 MobiDBLite consensus disorder prediction 721 741 - -
Lapu3g03835 1453 FunFam CRS2-associated factor 1, chloroplastic 914 1009 - -
Lapu3g03835 1453 Coils Coil 771 791 - -
Lapu3g03835 1453 ProSiteProfiles CRM domain profile. 1307 1407 IPR001890 GO:0003723
Lapu3g03835 1453 Pfam C2 domain 293 382 IPR000008 -
Lapu3g03835 1453 Pfam C2 domain 607 703 IPR000008 -
Lapu3g03835 1453 Pfam C2 domain 474 575 IPR000008 -
Lapu3g03835 1453 MobiDBLite consensus disorder prediction 311 330 - -
Lapu3g03835 1453 Coils Coil 1191 1211 - -
Lapu3g03835 1453 CDD SMP_SF 123 278 - -
Lapu3g03835 1453 CDD C2 607 703 - -
Lapu3g03835 1453 SMART C2_3c 606 700 IPR000008 -
Lapu3g03835 1453 SMART C2_3c 474 572 IPR000008 -
Lapu3g03835 1453 SMART C2_3c 293 415 IPR000008 -
Lapu3g03835 1453 Coils Coil 1246 1273 - -
Lapu3g03835 1453 SUPERFAMILY YhbY-like 1098 1189 IPR035920 -
Lapu3g03835 1453 MobiDBLite consensus disorder prediction 883 903 - -
Lapu3g03835 1453 ProSiteProfiles CRM domain profile. 913 1009 IPR001890 GO:0003723
Lapu3g03835 1453 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 287 384 IPR035892 -
Lapu3g03835 1453 ProSiteProfiles C2 domain profile. 453 573 IPR000008 -
Lapu3g03835 1453 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 474 590 IPR035892 -
Lapu3g03835 1453 ProSiteProfiles C2 domain profile. 579 701 IPR000008 -
Lapu3g03835 1453 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
Lapu3g03835 1453 ProSiteProfiles CRM domain profile. 1096 1193 IPR001890 GO:0003723
Lapu3g03835 1453 Coils Coil 882 902 - -
Lapu3g03835 1453 FunFam CRM-domain containing factor CFM3B, chloroplastic 1308 1410 - -
Lapu3g03835 1453 SUPERFAMILY YhbY-like 1308 1406 IPR035920 -
Lapu3g03835 1453 SMART CRS1_YhbY_2 1309 1396 IPR001890 GO:0003723
Lapu3g03835 1453 SMART CRS1_YhbY_2 915 998 IPR001890 GO:0003723
Lapu3g03835 1453 SMART CRS1_YhbY_2 1098 1182 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03835 Lapu-Chr3 61885752 61900479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03835 356 741 Lipid Metabolism Gene Families AT3G57880 25.751 1.03e-15 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03835 - - gmx:100805496 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03835 3 61885752 61900479 Lapu3g03835 3 61885752 61900479 ECH
Lapu3g03835 3 61885752 61900479 Lapu4g00191 4 1897590 1904515 PCT