Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03954 ATGATCACGTTAACCGACTTTTACCACGTCATGACCGCAATGGTTCCTCTCTACGTCGCCATGATACTCGCTTACGGTTCGGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCCGGCATAAACCGCTTCGTGGCTCTGTTCGCAGTCCCGCTACTCTCCTTCCACTTCATCGCCTCGAACAACCCCTACGAGATGAACTTCCGGTTCATCGCGGCGGACACGCTGCAGAAGATGATCGTGTTGGTGGTGCTGACGATCTGGAGCAACGTGAGCAAGAGGGGGTGTTTGGAGTGGACGATAACGCTGTTCTCCATCTCCACCCTCCCGAACACACTGGTGATGGGCATTCCGTTACTGAAGGGGATGTACGGGGAGTTCTCCGGGAGTTTGATGGTCCAGATAGTGGTCCTCCAGTGCATCATCTGGTACACCTTGATGCTGTTCATGTTCGAGTATAGAGGCGCCAGAATGTTGATCTCTGAGCAGTTCCCAGACACTGGCGCCACCATTGTCTCCATCCACGTCGACTCCGATGTCATGTCGCTTGATGGACGACAGCCGTTGGAAACCCAAGCCCAAATCAAAGAGGACGGCAAACTCCATGTCACCGTCAGAAAATCCAACGCTTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACCCCTCGCCCTTCCAACCTCACCAACGCAGAAATTTACTCTCTCCAGTCCTCCACAAACCCCACTCCCAGAGCCTCCAGCTTCAACCACTCCGATTTTTACTCCATCATGGCCCCTCCTCGTAACTCCAACTTCACTAACAACGACGTTTATGCCTTCTCCGCTTCCAGAGGACCAACTCCCAGACCTTCCAATTACGACGAAGATGCTTCCGCAGCTGCTAATACTAATAACAGTGCCAAACCCAAGCACCATTACCCTGCTCCTAACCCTGGCATCTTCTCCCCCTCCGCCCATAAATATGGTCCCAAGAAGCCCAATGGACAGCCCCACGCCCACCCCAAGCCAGACCATCCAAACAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCGGTTTCCGATGTGTTTGCTGGACAAGAATACGATCATAAAGAAGTGAAGCTAGCTGTGTCTCCCACAAAAGTAGAGGGTAGCAGAGACACTCAAGAGGAGTACCTTGAGAAGGAGGACTTTACTTTTGAAAACAGAGGGATTGAGAATGACCATGAAGGTGAGAAAGTTGGGAACGGAAATCCAAAAGCTATGCCTCCAACGAGTGTAATGACAAGGCTTATTTTGATCATGGTGTGGAGGAAACTCATAAGAAATCCCAACACCTACTCCAGCCTAATCGGCCTAACTTGGTCCCTTATTTCATTCAGGTGGAACGTTGAAATGCCTGCCATCATTGCCAAGTCTATTTCCATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTACACGTTGCCATTGTTCAGGCAGCTCTTCCCCAGGGAATTGTCCCATTTGTCTTTGCAAAGGAATACAATGTACATCCTGATATTCTCAGCACTGGTGTTATTTTTGGGATGTTGATTGCATTGCCCATTACGCTGGTGTACTACATCTTACTGGGGTTATGA 1779 0.5003 MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKMIVLVVLTIWSNVSKRGCLEWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLISEQFPDTGATIVSIHVDSDVMSLDGRQPLETQAQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSTNPTPRASSFNHSDFYSIMAPPRNSNFTNNDVYAFSASRGPTPRPSNYDEDASAAANTNNSAKPKHHYPAPNPGIFSPSAHKYGPKKPNGQPHAHPKPDHPNKDLHMFVWSSSASPVSDVFAGQEYDHKEVKLAVSPTKVEGSRDTQEEYLEKEDFTFENRGIENDHEGEKVGNGNPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03954 592 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 592 - -
Lapu3g03954 592 Pfam Membrane transport protein 9 587 IPR004776 GO:0016020|GO:0055085
Lapu3g03954 592 MobiDBLite consensus disorder prediction 213 235 - -
Lapu3g03954 592 MobiDBLite consensus disorder prediction 281 346 - -
Lapu3g03954 592 MobiDBLite consensus disorder prediction 296 310 - -
Lapu3g03954 592 NCBIfam auxin efflux carrier 1 592 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03954 Lapu-Chr3 62969187 62973179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g03954 1 583 Organic Solute Cotransporters AT1G73590 68.463 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03954 K13947 - gmx:100786572 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03954 3 62969187 62973179 Lapu3g03954 3 62969187 62973179 ECH
Lapu3g03954 3 62969187 62973179 Lapu4g00257 4 2580792 2585525 PCT