Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g03555 ATGTCAAGTCACGGTGGTTCTTCTCGAAGGGGAGGTTCGTTGGCCAACAGCCCCTCGCTGAACAAGAAGAAAGCCTCCGAGTATTCGCCGCTTGACCTTACTACCCGTAAAACCTTCCCGTCACCGCGCACCGTGGGAGAGCGAACTGTGAAATCATTGCGGCTCTCAAAGGCATTGACAGTTCCTGAAACAACAACTGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAGAGTAGATGCTCTACTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACAAGAGTTATTGCTCGTGAGGTTAATCTTGAAGAAACAACGGTTTCCAAGGTCATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAGGTTCAGACATTTACCTGTGGTGGAGAACGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAAGGCAATTGCGGCTGCTGTTGAAGGTATCGAAAAACACTGGGGAACACCTACGTCTGGCACCAATTCGACATTCTTTGATACTCTTCGCGAGCAGATATTTAAGCCATCTTTGTCTACAATCATTCCTGAGAATTCAAAGGTTGTTACAGTTTCACCAACAGACTCAGTTTTGGCGACAACAAAGAAGATGCTTGAACTTCGTGTAAGTTCTGCAGTTGTGACTGTTGATGACAAACCTTGTGGTATCCTTACTTCAAAGGATATCTTGATGCGGGTGATAGCACAAAGTCTTCCTCCAGCGTTTACTCTTGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCCGTTGTTGATAGAGATGGCACTGTTGTTGCTACGGTTGATGTAATTCATATAACTCACGCGGCTGTGGCGACAGCTAGTCAGGTCGGAAATAGTGCTAGTTTTAACAATGAAGCAGCCAATTCCATGATACAAAAATTTTGGGATTCGGCCATGGCCTTAGTTCCAAATGGGGAGGATGACGATTCCCAAAGCGAGACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGCAAGATCCATTTCTTATCTTGGGTCAAGCATGCAGAACGCGTTTTCCTTCAAAGTACAAGACAGGAAGGGTAGATTGCATAGGTTCACATGCGATGCTCGGAGCTTGGCAGAGGTTATAACTGGCATCATTCATAGAGTCGGTGATGAAATTGACCCCACGAACCTGCCCCAAATTTTGTACGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTTCCGCAGCTGTAGATCACGCCAAGACGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCAGGAACACGTAGTTGTGGAAATGGTTCAAGTTCAGTAAGTTGGAAATATGGTAATTCAGAATCATGGGCAACAGCATACAGCACCATTGCTGCTGGAGCTGCAATTGTTGCTGCCTTGGGCCTATTGGCGTTTGTGAGGCGAAGTAAGTGA 1632 0.4528 MSSHGGSSRRGGSLANSPSLNKKKASEYSPLDLTTRKTFPSPRTVGERTVKSLRLSKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETTVSKVMTRNPVFVLSDTLAVEALQKMVQGRFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTPTSGTNSTFFDTLREQIFKPSLSTIIPENSKVVTVSPTDSVLATTKKMLELRVSSAVVTVDDKPCGILTSKDILMRVIAQSLPPAFTLVEKVMTPNPECAIIDTPIVDALHTMHDGKFLHLPVVDRDGTVVATVDVIHITHAAVATASQVGNSASFNNEAANSMIQKFWDSAMALVPNGEDDDSQSETSLKMISEGGETARSISYLGSSMQNAFSFKVQDRKGRLHRFTCDARSLAEVITGIIHRVGDEIDPTNLPQILYEDEENDKVVLASDSDLSAAVDHAKTAGLKGLRLHLDYSGTRSCGNGSSSVSWKYGNSESWATAYSTIAAGAAIVAALGLLAFVRRSK* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g03555 543 SMART cbs_1 123 167 IPR000644 -
Lapu3g03555 543 SMART cbs_1 227 274 IPR000644 -
Lapu3g03555 543 SMART cbs_1 57 105 IPR000644 -
Lapu3g03555 543 SMART cbs_1 292 340 IPR000644 -
Lapu3g03555 543 ProSiteProfiles CBS domain profile. 221 280 IPR000644 -
Lapu3g03555 543 Gene3D - 39 185 IPR046342 -
Lapu3g03555 543 ProSiteProfiles CBS domain profile. 289 346 IPR000644 -
Lapu3g03555 543 Pfam PB1 domain 410 492 IPR000270 GO:0005515
Lapu3g03555 543 SMART PB1_new 409 494 IPR000270 GO:0005515
Lapu3g03555 543 Pfam CBS domain 56 102 IPR000644 -
Lapu3g03555 543 Pfam CBS domain 285 336 IPR000644 -
Lapu3g03555 543 Pfam CBS domain 116 160 IPR000644 -
Lapu3g03555 543 Pfam CBS domain 225 271 IPR000644 -
Lapu3g03555 543 ProSiteProfiles PB1 domain profile. 407 494 IPR000270 GO:0005515
Lapu3g03555 543 Gene3D - 215 356 IPR046342 -
Lapu3g03555 543 MobiDBLite consensus disorder prediction 1 46 - -
Lapu3g03555 543 CDD PB1_MUG70 410 494 - -
Lapu3g03555 543 MobiDBLite consensus disorder prediction 1 24 - -
Lapu3g03555 543 SUPERFAMILY CAD & PB1 domains 400 491 - -
Lapu3g03555 543 CDD CBS_pair_MUG70_2 225 341 - -
Lapu3g03555 543 SUPERFAMILY CBS-domain pair 47 163 IPR046342 -
Lapu3g03555 543 ProSiteProfiles CBS domain profile. 120 178 IPR000644 -
Lapu3g03555 543 SUPERFAMILY CBS-domain pair 226 339 IPR046342 -
Lapu3g03555 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 42 480 - -
Lapu3g03555 543 CDD CBS_pair_MUG70_1 55 171 - -
Lapu3g03555 543 ProSiteProfiles CBS domain profile. 54 113 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g03555 Lapu-Chr3 58997843 59004167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g03555 - - gmx:100783514 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03555 3 58997843 59004167 Lapu3g03555 3 58997843 59004167 ECH
Lapu9g00981 9 15428055 15433700 Lapu3g03555 3 58997843 59004167 PCT